Items where Year is 2020
Number of items: 64. BBachmayr, m: and Djurdjevac, A. (2020) Multilevel Representations of Isotropic Gaussian Random Fields on the Sphere. : . (Submitted) Banisch, R. and Trstanova, Z. and Bittracher, A. and Klus, S. and Koltai, P. (2020) Diffusion maps tailored to arbitrary non-degenerate Ito processes. Applied and computational harmonic analysis, 48 (1). pp. 242-265. ISSN 1063-5203, 1096-603X Bastian, P. and Blatt, M. and Dedner, A. and Dreier, N.-A. and Engwer, C. and Fritze, R. and Gräser, C. and Grüninger, C. and Kempf, D. and Klöfkorn, R. and Ohlberger, M. and Sander, O. (2020) The Dune framework: Basic concepts and recent developments. Computers & Mathematics with Applications . pp. 1-69. ISSN 0898-1221 (In Press) Bellingeri, C. and Djurdjevac, A. and Friz, P.K. and Tapia, N. (2020) Transport and continuity equations with (very) rough noise. . . (Submitted) Benner, P. and Breiten, T. and Hartmann, C. and Schmidt, B. (2020) Model reduction of controlled Fokker-Planck and Liouville-von Neumann equations. J. Comp. Dyn., 7 (1). pp. 1-33. Bittracher, Andreas and Schütte, Christof (2020) A weak characterization of slow variables in stochastic dynamical systems. SFB 1114 Preprint in arXive . pp. 1-20. ISSN 2005.01631 (Submitted) Boyko, V. and Vercauteren, N. (2020) Multiscale Shear Forcing of Turbulence in the Nocturnal Boundary Layer: A Statistical Analysis. Boundary-Layer Meteorology, 177 (2-3). ISSN Electronic: 1573-1472; Print: 0006-8314 CChurch, L. and Djurdjevac, A. and Elliott, C.M. (2020) A domain mapping approach for elliptic equations posed on random bulk and surface domains. Numerische Mathematik, 146 . pp. 1-49. ISSN Electronic: 0945-3245; Print: 0029-599X Corbi, F. and Bedford, J. and Sandri, L. and Funiciello, F. and Gualandi, A. and Rosenau, M. (2020) Predicting Imminence of Analog Megathrust Earthquakes With Machine Learning: Implications for Monitoring Subduction Zones. Geophysical Research Letters . pp. 1-10. ISSN 1944-8007 DDelle Site, L. and Klein, R. (2020) Liouville-type equations for the n-particle distribution functions of an open system. Journal of Mathematical Physics, 61 (8). Delle Site, L. and Klein, R. and Höfling, F. and Viand, R. E. (2020) Theory and simulation of open systems out of equilibrium. J. Chem. Phys. (2020);, 153 (10). pp. 1-7. ISSN 101102 Delle Site, L. and Praprotnik, M. and Bell, J. B. and Klein, R. (2020) Particle–Continuum Coupling and its Scaling Regimes: Theory and Applications. Advanced Theory and Simulation, 3, 1900232 (2020), 3 (190023). pp. 1-20. Delle Site, L. and Praprotnik, M. and Bell, John B. and Klein, R. (2020) Particle-Continuum Coupling and its Scaling Regimes: Theory and Applications. Advanced Theory and Applications . Delle Site, L. and Praprotnik, M. and Bell, John B. and Klein, R. (2020) "Particle-Continuum Coupling and its Scaling Regimes: Theory and Applications". Advanced Theory and Simulations, 3 (5). FFroyland, Gary and Koltai, Péter and Stahn, Martin (2020) Computation and Optimal Perturbation of Finite-Time Coherent Sets for Aperiodic Flows Without Trajectory Integration. SIAM J. APPLIED DYNAMICAL SYSTEMS, 19 (3). pp. 1659-1700. Frömberg, Daniela and Höfling, Felix (2020) Generalized master equation for first-passage problems in partitioned spaces. Journal of Physics A . pp. 1-23. (Submitted) Funiciello, Francesca and Corbi, Fabio and Heuret, Arnauld and Piromallo, Claudia and Rosenau, Matthias (2020) Empirical Analysis of Global-Scale Natural Data and Analogue Seismotectonic Modelling Data to Unravel the Seismic Behaviour of the Subduction Megathrust. Frontiers in Earth Science, 8 . pp. 1-626. ISSN 2296-6463 GGräser, C. and Alathur Srinivasan, P. A. (2020) Error bounds for PDE-regularized learning. arXiv:2003.06524 . pp. 1-20. (Submitted) HHaghdoost, M.R. and Edgington-Mitchell, D. and Nadolski, M. and Klein, R. and Oberleithner, K. (2020) Dynamic Evolution of a Transient Supersonic Trailing Jet Induced by a Strong Incident Shock Wave. Phys. Rev. Fluids, 5 (7). Haghdoost, M.R. and Thethy, B.S. and Nadolski, M. and Klein, R. and Honnery, D. and Hennington- Mitchell, D. and Seo, B. and Oberleithner, K. and Paschereit, O. (2020) Evaluation of Shock Dividers using Numerical and Experimental Methods. In: AIAA SciTech. Harikrishnan, A. and Ansorge, C. and Klein, R. and Vercauteren, N. (2020) The curious nature of hairpin vortices. Gallery of Fluid Motion. In: 73th Annual Meeting of the APS Division of Fluid Dynamics, November 22, 2020 — November 24, 2020, Chicago, IL Virtual. Hastermann, G. and Reinhardt, M. and Klein, R. and Reich, S. (2020) Balanced data assimilation for highly-oscillatory mechanical systems. Communications in Applied Mathematics & Computational Science . pp. 1-36. (Submitted) Haug, Ø. T. and Rosenau, M. and Rudolf, M. and Leever, K. and Oncken, O. (2020) Variations in runout of rock avalanches controlled by fragmentation, not basal friction. EarthArXiv . pp. 1-11. (Submitted) Heida, M. and Kornhuber, R. and Podlesny, J. (2020) Fractal homogenization of multiscale interface problems. Multiscale Modeling & Simulation, 18 (1). pp. 294-314. ISSN 1540-3459 Helfmann, Luzie and Ribera Borrell, Enric and Schütte, Christof and Koltai, Péter (2020) Extending Transition Path Theory: Periodically Driven and Finite-Time Dynamics. Journal of Nonlinear Science . pp. 1-46. Henneke, F. and Lin, L. and Vorwerk, C. and Draxl, C. and Klein, R. and Yang, C. (2020) Fast Optical Absorption Spectra Calculations for Periodic Solid State Systems. Communications in Applied Mathematics and Computational Science, 15 (1). pp. 89-113. Hittmeir, S. and Klein, R. and Li, J. and Titi, E. (2020) Global well-posedness for the primitive equations coupled to nonlinear moisture dynamics with phase changes. Nonlinearity, 33 (7). pp. 3206-3236. Hittmeir, S. and Klein, R. and Müller, A. and Névir, P. (2020) The Dynamic State Index with Moisture and Phase Changes. Mathematics of Climate and Weather Forecasting 2020 . pp. 1-12. (Submitted) Hoffmann, Marie and Monaghan, Michael T. and Reinert, Knut (2020) PriSeT: Efficient De Novo Primer Discovery. bioRxiv . (Unpublished) Hufsky, Franziska and Lamkiewicz, Kevin and Almeida, Alexandre and Aouacheria, Abdel and Arighi, Cecilia and Bateman, Alex and Baumbach, Jan and Beerenwinkel, Niko and Brandt, Christian and Cacciabue, Marco and Chuguransky, Sara and Drechsel, Oliver and Finn, Robert D and Fritz, Adrian and Fuchs, Stephan and Hattab, Georges and Hauschild, Anne-Christin and Heider, Dominik and Hoffmann, Marie and Hölzer, Martin and Hoops, Stefan and Kaderali, Lars and Kalvari, Ioanna and von Kleist, Max and Kmiecinski, Renó and Kühnert, Denise and Lasso, Gorka and Libin, Pieter and List, Markus and Löchel, Hannah F and Martin, Maria J and Martin, Roman and Matschinske, Julian and McHardy, Alice C and Mendes, Pedro and Mistry, Jaina and Navratil, Vincent and Nawrocki, Eric P and O’Toole, Áine Niamh and Ontiveros-Palacios, Nancy and Petrov, Anton I and Rangel-Pineros, Guillermo and Redaschi, Nicole and Reimering, Susanne and Reinert, Knut and Reyes, Alejandro and Richardson, Lorna and Robertson, David L and Sadegh, Sepideh and Singer, Joshua B and Theys, Kristof and Upton, Chris and Welzel, Marius and Williams, Lowri and Marz, Manja (2020) Computational strategies to combat COVID-19: useful tools to accelerate SARS-CoV-2 and coronavirus research. Briefings in Bioinformatics . ISSN 1467-5463 Höfling, F. and Dietrich, S. (2020) Finite-size corrections for the static structure factor of a liquid slab with open boundaries. Journal of Chemical Physics, 153 (5). pp. 1-13. IIravani, Sahar and Conrad, T. O. F. (2020) An Interpretable Deep Learning Approach for Biomarker Detection in LC-MS Proteomics Data. Bioinformatics . ISSN 1367-4803 (Submitted) JJuds, Carmen and Schmidt, Johannes and Weller, Michael and Lange, Thorid and Conrad, T. O. F. and Boerner, Hans (2020) Combining Phage Display and Next-generation Sequencing for Materials Sciences: A Case Study on Probing Polypropylene Surfaces. Journal of the American Chemical Society, 142 (24). ISSN 0002-7863 KKORNHUBER, RALF and PODLESNY, JOSCHA and YSERENTANT, HARRY (2020) NUMERICAL HOMOGENIZATION OF FRACTAL INTERFACE PROBLEMS. arXive . pp. 1-30. (Submitted) Kaiser, A. and Faranda, D. and Krumscheid, S. and Belušić, D. and Vercauteren, N. (2020) Detecting regime transitions of the nocturnal and Polar near-surface temperature inversion. Journal of the Atmospheric Sciences . ISSN 0022-4928; eISSN: 1520-0469 Kies, T. and Gräser, C. and Delle Site, L. and Kornhuber, R. (2020) Free energy computation of particles with membrane-mediated interactions via Langevin dynamics. arXiv:2009.14713 . pp. 1-20. (Submitted) Kim, J.J. and Kim, J. and Reinert, K. (2020) Vaquita-LR: A new bioinformatics tool for identifying structural variants using long and short reads. In: Abstracts from the 53rd European Society of Human Genetics (ESHG) Conference: Interactive e-Posters. In: 53rd European Society of Human Genetics (ESHG) Conference, June 6–9, 2020, virtual. Koltai, Peter and von Lindheim, Johannes and Neumayer, Sebastian and Steidl, Gabriele (2020) Transfer Operators from Optimal Transport Plans for Coherent Set Detection. arXiv . pp. 1-34. (Submitted) Kosari, Ehsan and Rosenau, Matthias and Bedford, Jonathan and Rudolf, Michael and Oncken, Onno (2020) On the relationship between offshore geodetic coverage and slip model uncertainty: Analog megathrust earthquake case studies. Geophysical Research Letters, 47 . pp. 1-15. LLe Duc, Huy and Conrad, T. O. F. (2020) A light-weight and highly flexible software system for analyzing large bio-medical datasets. (Submitted) MMelnyk, Kateryna and Klus, S. and Montavon, Grègoire and Conrad, T. O. F. (2020) Graph Kernel Koopman Embedding for Human Microbiome Analysis. Applied Network Science, 5 (96). ISSN 2364-8228 Mielke, A. and Roubícek, T. (2020) Thermoviscoelasticity in Kelvin-Voigt rheology at large strains. Arch. Rational Mech. Anal., 238 . pp. 1-45. Mielke, Alexander and Netz, Roland R. and Zendehroud, Sina (2020) A rigorous derivation and energetics of a wave equation with fractional damping. arXiv . pp. 1-20. (Submitted) Müller, Annette and Niedrich, Benjamin and Névir, Peter (2020) Three-dimensional potential vorticity structures for extreme precipitation events on the convective scale. Tellus A: Dynamic Meteorology and Oceanography, 72 (1). pp. 1-20. ISSN (Print) (Online) Journal homepage: https://www.tandfonline.com/loi/zela20 NNüsken, N. and Richter, L. (2020) Solving high-dimensional Hamilton-Jacobi-Bellman PDEs using neural networks: perspectives from the theory of controlled diffusions and measures on path space. SFB 1114 Preprint in arXiv . pp. 1-40. (Submitted) PPfeuffer, Julianus and Sachsenberg, Timo and Dijkstra, Tjeerd M. H. and Serang, Oliver and Reinert, Knut and Kohlbacher, Oliver (2020) EPIFANY: A Method for Efficient High-Confidence Protein Inference. Journal of Proteome Research, 19 (3). pp. 1060-1072. ISSN 1535-3893 Pieper, Robert and Dadi, Temesgen H. and Pieper, Laura and Vahjen, Wilfried and Franke, André and Reinert, Knut and Zentek, Jürgen (2020) Concentration and chemical form of dietary zinc shape the porcine colon microbiome, its functional capacity and antibiotic resistance gene repertoire. The ISME Journal, 14 (11). pp. 2783-2793. ISSN 1751-7362 RRams, Mona and Conrad, T. O. F. (2020) Dictionary Learning for transcriptomics data reveals type-specific gene modules in a multi-class setting. Information Technology, 62 (3). ISSN 2196-7032 Rams, Mona and Conrad, T. O. F. (2020) Sparse dictionary learning allows model-free pseudotime estimation of transcriptomics data. BMC Bioinformatics . ISSN 1471-2105 (Submitted) Reinert, Knut and Iliopoulos, Costas S and Alzamel, Mai and Pockrandt, Christopher and Xu, Jinbo (2020) GenMap: ultra-fast computation of genome mappability. Bioinformatics, 36 (12). pp. 3687-3692. ISSN 1367-4803 Renard, Bernhard Y and Reinert, Knut and Seiler, Enrico and Dadi, Temesgen H and Piro, Vitor C (2020) ganon: precise metagenomics classification against large and up-to-date sets of reference sequences. Bioinformatics, 36 (Supple). i12-i20. ISSN 1367-4803 Richter, Lorenz and Boustati, Ayman and Nüsken, Nikolas and Ruiz, Francisco J. R. and Akyildiz, Ömer Deniz (2020) VarGrad: A Low-Variance Gradient Estimator for Variational Inference. Advances in Neural Information Processing Systems 2020 . pp. 1-25. (Submitted) SSchiefer, Christopher and Bux, Marc and Brandt, Joergen and Messerschmidt, Clemens and Reinert, Knut and Beule, Dieter and Leser, Ulf (2020) Portability of Scientific Workflows in NGS Data Analysis: A Case Study. Other. arXiv.org. (Submitted) Schlutow, M. and Voelker, G.S. (2020) On strongly nonlinear gravity waves in a vertically sheared atmosphere. Mathematics of Climate and Weather Forecasting, 6 (1). pp. 63-74. Schlutow, M. and Wahlén, E. (2020) Generalized modulation theory for nonlinear gravity waves in a compressible atmosphere. Mathematics of Climate and Weather Forecasting, 6 (1). pp. 97-112. ISSN 2353-6438 (online) Schönhuth, Alexander and Moeinzadeh, M-Hossein and Yang, Jun and Muzychenko, Evgeny and Gallone, Giuseppe and Heller, David and Reinert, Knut and Haas, Stefan and Vingron, Martin (2020) Ranbow: A fast and accurate method for polyploid haplotype reconstruction. PLOS Computational Biology, 16 (5). e1007843. ISSN 1553-7358 Seiler, Enrico and Mehringer, Svenja and Darvish, Mitra and Turc, Etienne and Reinert, Knut (2020) Raptor: A fast and space-efficient pre-filter for querying very large collections of nucleotide sequences. bioRxiv . (Unpublished) Stevens, B. and Acquistapace, C. and Hansen, A. and Heinze, R. and Klinger, C. and Klocke, D. and Rybka, H. and Schubotz, W. and Windmiller, J. and Adamidis, P. and Arka, I. and Barlakas, V. and Biercamp, J. and Brueck, M. and Brune, S.A. and Buehler, U. and Burkhardt, U. and Cioni, G. and Costa-Suròs, M. and Crewell, S. and Crüger, T. and Deneke, H. and Friederichs, P. and Henken, C.C. and Hohenegger, C. and Jacob, M. and Jakub, F. and Kalthoff, N. and Köhler, M. and van Laar, T.W. and Li, P. and Löhnert, U. and Macke, A and Madenach, N. and Mayer, B. and Nam, C. and Naumann, A.K. and Peters, K. and Poll, S. and Quaas, J. and Röber, N. and Rochetin, N. and Scheck, L. and Schemann, V. and Schnitt, S. and Senf, F. and Shapkalijevski, M. and Simmer, C. and Singh, S. and Sourdeval, O. and Spickermann, D. and Strandgren, J. and Tessiot, O. and Vercauteren, N. and Vial, J. and Voigt, A. and Zängl, G. and Seifert, A. (2020) The added value of large-eddy and storm-resolving models for simulating clouds and precipitation. Journal of the Meteorological Society of Japan, 98 . pp. 395-435. ISSN Online: 2186-9057 Print: 0026-1165 Straube, Arthur V. and Kowalik, Bartosz G. and Netz, Roland R. and Höfling, Felix (2020) Rapid onset of molecular friction in liquids bridging between the atomistic and hydrodynamic pictures. Communications Physics, 3 (126). pp. 1-11. TTuncay, E. G. and Erdur, R. C. and Conrad, T. O. F. (2020) Parallel Exchange of Randomized SubGraphs for Optimization of Network Alignment: PERSONA. IEEE Transactions on Computational Biology and Bioinformatics . ISSN 1557-9964 (Submitted) VViand, R. E. and Höfling, F. and Klein, R. and Delle Site, L. (2020) Open Systems out of Equilibrium: Theory and Simulation. J. Chem. Phys., 153 (10). WWitt, Natalie and Andreotti, Sandro and Busch, Anne and Neubert, Kerstin and Reinert, Knut and Tomaso, Herbert and Meierhofer, David (2020) Rapid and Culture Free Identification of Francisella in Hare Carcasses by High-Resolution Tandem Mass Spectrometry Proteotyping. Frontiers in Microbiology, 11 . ISSN 1664-302X Wolf, Silver A and Epping, Lennard and Andreotti, Sandro and Reinert, Knut and Semmler, Torsten and Birol, Inanc (2020) SCORE: Smart Consensus Of RNA Expression—a consensus tool for detecting differentially expressed genes in bacteria. Bioinformatics . ISSN 1367-4803 Wulkow, Hanna and Conrad, T. O. F. and Djurdjevac Conrad, Natasa and Mueller, Sebastian Alexander and Nagel, Kai and Schütte, Ch. (2020) Prediction of Covid-19 spreading and optimal coordination of counter-measures: From microscopic to macroscopic models to Pareto fronts. medRxiv . (Submitted) |