Repository: Freie Universit├Ąt Berlin, Math Department

Dynamical reweighting methods for Markov models

Kieninge, Stefanie and Donati, Luca and Keller, Bettina (2019) Dynamical reweighting methods for Markov models. Current Opinion in Structural Biology, 61 . pp. 124-131. ISSN 0959-440X

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Official URL: https://doi.org/10.1016/j.sbi.2019.12.018

Abstract

Conformational dynamics is essential to biomolecular processes. Markov State Models (MSMs) are widely used to elucidate dynamic properties of molecular systems from unbiased Molecular Dynamics (MD). However, the implementation of reweighting schemes for MSMs to analyze biased simulations is still at an early stage of development. Several dynamical reweighing approaches have been proposed, which can be classified as approaches based on (i) Kramers rate theory, (ii) rescaling of the probability density flux, (iii) reweighting by formulating a likelihood function, (iv) path reweighting. We present the state-of-the-art and discuss the methodological differences of these methods, their limitations and recent applications.

Item Type:Article
Subjects:Mathematical and Computer Sciences > Mathematics > Applied Mathematics
Divisions:Department of Mathematics and Computer Science > Institute of Mathematics
ID Code:2419
Deposited By: Monika Drueck
Deposited On:22 May 2020 10:01
Last Modified:22 May 2020 10:01

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