Items where Year is 2014

Bowman, G. R. and Pande, V. S. and Noé, F., eds. (2014) An Introduction to Markov State Models and Their Application to Long Timescale Molecular Simulation. Advances in Experimental Medicine and Biology, 797 . Springer.

Deuflhard, P. and Grötschel, M. and Hömberg, D. and Horst, U. and Kramer, J. and Mehrmann, V. and Polthier, K. and Schmidt, F. and Schütte, Ch. and Skutella, M. and Sprekels, J., eds. (2014) MATHEON: mathematics for key technologies. EMS Series in Industrial and Applied Mathematics, 1 . EMS Publishing House, Zürich. ISBN 978-3-03719-137-8

Bach, V. and Delle Site, L., eds. (2014) Many-Electron Approaches in Physics, Chemistry and Mathematics. Mathematical Physics Studies . Springer, Heidelberg. ISBN 978-3-319-06378-2

von Larcher, T. and Williams, P.D., eds. (2014) Modeling Atmospheric and Oceanic Flows: Insights from Laboratory Experiments and Numerical Simulations. Wiley. ISBN 978-1-118-85593-5

Accardi, A. and Schmidt, B. (2014) Quantum effects on translation and rotation of molecular chlorine in solid para-hydrogen. (Unpublished)

Agarwal, A. and Wang, H. and Schütte, Ch. and Delle Site, L. (2014) Chemical potential of liquids and mixtures via Adaptive Resolution Simulation. Journal of Chemical Physics, 141 (3). ISSN 0021-9606

Bach, V. and Delle Site, L. (2014) On Some Open Problems in Many-Electron Theory. In: Many-Electron Approaches in Physics, Chemistry and Mathematics: A Multidisciplinary View. Mathematical Physics Studies . Springer, pp. 413-417. ISBN 978-3-319-06378-2

Bauer, M. and Baumann, M. and Scheck, L. and Gassmann, A. and Heuveline , V. and Jones, S. (2014) Simulation of tropical-cyclone-like vortices in shallow-water ICON-hex using goal-oriented r-adaptivity. Theoretical and Computational Fluid Dynamics, 28 (1). pp. 107-128. ISSN Print: 0935-4964 Online:1432-2250

Bauer, Chris (2014) Exploiting Proteomics Data. PhD thesis, Freie Universität Berlin.

Benacchio, T. (2014) A blended semi-implicit numerical model for weakly compressible atmospheric dynamics. PhD thesis, Freie Universität Berlin.

Benacchio, T. and O'Neill, W.P. and Klein, R. (2014) A blended soundproof-to-compressible numerical model for small- to mesoscale atmospheric dynamic. Monthly Weather Review, 142 (12). pp. 4416-4438. ISSN Online:1520-0493; Print: 0027-0644

Berg, M. and Accardi, A. and Paulus, B. and Schmidt, B. (2014) Rotationally Adiabatic Pair Interactions of para- and ortho-Hydrogen with the Halogen Molecules F2, Cl2 and Br2. J. Chem. Phys., 141 (7). 074303.

Berndt, P. (2014) On the Use of the HLL-Scheme or the Simulation of the Multi-Species Euler Equations. In: Finite Volumes for Complex Applications VII-Elliptic, Parabolic and Hyperbolic Problems. Springer, pp. 809-816. ISBN 978-3-319-05590-9 Online: 978-3-319-05591-6

Berninger, H. and Loisel, S. and Sander, O. (2014) The 2-Lagrange multiplier method applied to nonlinear transmission problems for the Richards equation in heterogeneous soil with cross points. SIAM J. Sci. Comput., 36 (5). A2166-A2198. ISSN 1064-8275

Berninger, H. and Ohlberger, M. and Sander, O. and Smetana, K. (2014) Unsaturated subsurface flow with surface water and nonlinear in- and outflow conditions. Mathematical Models and Methods in Applied Sciences, 24 (5). pp. 901-936. ISSN 1793-6314

Bienert, A. and Richter, K. and Stelling, N. and Maas, H.-G (2014) 3D-Vegetationsmodell aus Laserscannerdaten für forstmeteorologische Anwendungen am Beispiel des TurbEFA-Projektes. In: 8. Biomet Tagung "Mensch-Pflanze-Atmosphäre im 21. Jahrhundert", 2.-3.12.14, Dresden.

Blunck, A. and Mischau, A. and Mehlmann, S. (2014) Gender Competence in Mathematics Teacher Education. In: Gender in Science and Technology. Gender Studies . transcript Verlag, pp. 235-257. ISBN 9783839424346

Bobusch, B. and Berndt, P. and Paschereit, O. C. and Klein, R. (2014) Shockless explosion combustion: An innovative way of efficient constant volume combustion in gas turbines. Combustion Science and Technology, 186 (10-11). pp. 1680-1689.

Bockmayr, A. and Siebert, H. and Röblitz, S. and Schütte, Ch. and Deuflhard, P. (2014) Advanced mathematical modeling in systems biology. In: MATHEON : mathematics for key technologies. EMS series in industrial and applied mathematics, 1 . EMS Publishing House, Zürich, pp. 22-44. ISBN 978-3-03719-137-8

Bowman, G. R. and Pande, V. S. and Noé, F. (2014) Introduction and overview of this book. In: An Introduction to Markov State Models and Their Application to Long Timescale Molecular Simulation. Advances in Experimental Medicine and Biology, 797 . Springer, pp. 1-6.

Chen, X. and Yousef, K. P. and Duwe, S. and Karsch, K. and Grover, S. and Wählisch, S. and Obermeier, P. and Tief, F. and Muehlhans, S. and Seeber, L. and von Kleist, M. and Schweiger, B. and Rath , B. (2014) Quantitative influenza follow-up testing (QIFT) - a novel biomarker for the monitoring of disease activity at the point-of-care. PLoS ONE, 9 (3). ISSN 1932-6203

Chodera, J. D. and Noé, F. (2014) Markov state models of biomolecular conformational dynamics. Curr. Opin. Struct. Biol., 25 . pp. 135-144.

Ciccotti, G. and Ferrario, M. and Schütte, Ch. (2014) Molecular Dynamics Simulation. MDPI AG, Basel. ISBN 978-3-906980-65-2

Delle Site, L. (2014) Levy-Lieb Principle meets Quantum Monte Carlo. In: Many-Electron Approaches in Physics, Chemistry and Mathematics: A Multidisciplinary View. Mathematical Physics Studies . Springer, pp. 361-375. ISBN 978-3-319-06378-2

Delle Site, L. (2014) What is a Multiscale Problem in Molecular Dynamics? Entropy (Special Issue), 16 (1). pp. 23-40. ISSN 1099-4300

Dommert, F. and Wendler, K. and Qiao, B. and Delle Site, L. (2014) Generic force fields for ionic liquids. Journal of Molecular Liquids, 192 . pp. 32-37. ISSN 0167-7322

Gantner, Robert N. and Schillings, Claudia and Schwab, Christoph (2014) Multilevel Monte Carlo for Bayesian Inverse Problems. In: Swiss Numerics Day 2014, April 2014, Universität Zürich.

Gerber, S. and Oevermann, M. (2014) A two dimensional Euler–Lagrangian model of wood gasification in a charcoal bed – Part I: model description and base scenario. Science Direct, 115 . pp. 385-400.

Gräser, C. and Kornhuber, R. and Sack, U. (2014) Numerical simulation of coarsening in binary solder alloys. Computational Materials Science, 93 . pp. 221-233. ISSN 0927-0256

Gräser, C. and Sander, O. (2014) Polyhedral Gauß-Seidel converges. Journal of Numerical Mathematics, 22 (3). pp. 221-254. ISSN 1570-2820

Gräser, C. and Sander, O. (2014) Truncated nonsmooth Newton multigrid methods for simplex-constrained minimization problems. Preprint 384, IGPM Aachen . (Submitted)

Hansen, Markus and Schillings, Claudia and Schwab, Christoph (2014) Sparse approximation algorithms for high dimensional parametric initial value problems. In: Modeling, Simulation and Optimization of Complex Processes - HPSC 2012. Proceedings of the Fifth International Conference on High Performance Scientific Computing, March 5-9, 2012, Hanoi, Vietnam . Springer Cham, pp. 63-81. ISBN 978-3-319-09062-7

Harlander, U. and von Larcher, T. and Wright, G.B. and Hoff, M. and Alexandrov, K. and Egbers, C. (2014) Orthogonal decomposition methods to analyze PIV, LDA and thermography data of a thermally driven rotating annulus laboratory experiment. In: AGU Book Modelling Atmospheric and Oceanic flows: insights from laboratory experiments and numerical simulations. .. (Submitted)

Hartmann, C. and Banisch, Ralf and Sarich, M. and Badowski, T. and Schütte, Ch. (2014) Characterization of Rare Events in Molecular Dynamics. In: Molecular Dynamics Simulation. MDPI AG, Basel, pp. 222-249. ISBN 978-3-906980-65-2

Hartmann, C. and Latorre, J.C. and Pavliotis, G. A. and Zhang, W. (2014) Optimal control of multiscale systems using reduced-order models. J. Computational Dynamics, 1 (2). pp. 279-306. ISSN 2158-2505

Hauswedell, H. and Singer, J. and Reinert, K. (2014) Lambda: the local aligner for massive biological data. Bioinformatics (Oxford, England), 30 (17). i349-i355.

Hoffmann, M. J. and Matera, S. and Reuter, K. (2014) kmos: A lattice kinetic Monte Carlo framework. Computer Physics Communications, 185 (7). pp. 2138-2150.

Hu, J. and Kehr, B. and Reinert, K. (2014) NetCoffee: a fast and accurate global alignment approach to identify functionally conserved proteins in multiple networks. Bioinformatics, 30 (4). pp. 540-548. ISSN 1367-4803

Hédin, F. and Plattner, N. and Doll, J. D. and Meuwly, M. (2014) Spatial Averaging: Sampling Enhancement for Exploring Configurational Space of Atomic Clusters and Biomolecules. Journal of Chemical Theory and Computation, 10 (10). pp. 4284-4296. ISSN 1549-9618

Jasor, G. and Wacker, U. and Beheng, K.D. and Polifke, W. (2014) Modeling artifacts in the simulation of the sedimentation of raindrops with a Quadrature Method of Moments. Meteorologische Zeitschrift, 23 (4). pp. 369-385.

Jouvet, G. and Funk, M. (2014) Modelling the trajectory of the corpses of mountaineers who disappeared in 1926 on Aletschgletscher, Switzerland. Journal of Glaciology, 60 (220). pp. 255-261. ISSN 0022-1430

Jouvet, G. and Rappaz, J. (2014) Numerical analysis and simulation of the dynamics of mountain glaciers. In: Modeling, Simulation and Optimization for Science and Technology. Computational Methods in Applied Sciences (34). Springer Netherlands, pp. 83-92. ISBN 978-94-017-9053-6

Kabbe, G. and Wehmeyer, C. and Sebastiani, D. (2014) A Coupled Molecular Dynamics/Kinetic Monte Carlo Approach for Protonation Dynamics in Extended Systems. Journal of Chemical Theory and Computation, 10 (10). p. 4221. ISSN 1549-9618

Katchanov, J. and von Kleist, M. and Arasteh, K. and Stocker, H. (2014) “Time-to-Amphotericin B” in Cryptococcal Meningitis in a European Low-Prevalence Setting: Analysis of Diagnostic Delays. QJM: An International Journal of Medicine, 107 (10). pp. 799-803. ISSN 1460-2393

Kehr, B. and Trappe, K. and Holtgrewe, M. and Reinert, K. (2014) Genome alignment with graph data structures: a comparison. BMC Bioinformatics, 15 . ISSN 1471-2105

Kehr, Birte (2014) Contributions to computing and modeling multiple whole-genome alignments. PhD thesis, Freie Universität Berlin.

Keller, B. and Kobitski, A. and Jäschke, A. and Nienhaus, G.U. and Noé, F. (2014) Complex RNA folding kinetics revealed by single molecule FRET and hidden Markov models. J. Am. Chem. Soc., 136 . pp. 4534-4543.

Klein, R. and Benacchio, T. and O'Neill, W.P. (2014) Using the sound-proof limit for balanced data initialization. In: ECMWF Seminar on Numerical Methods for Atmosphere and Ocean Modelling, 2-5 September 2013, Reading, UK.

Koltai, Péter and Junge, Oliver (2014) Quantized nonlinear feedback design by a split dynamic programming approach. In: 21st International Symposium on Mathematical Theory of Networks and Systems (MTNS 2014), Groningen (The Netherlands).

Koltai, Péter and Volf, Alexander (2014) Optimizing the stable behavior of parameter-dependent dynamical systems --- maximal domains of attraction, minimal absorption times. Journal of Computational Dynamics, 1 (2). pp. 339-356. ISSN 2158-2491

Kornhuber, R. and Schwab, C. and Wolf, M.W. (2014) Multilevel Monte Carlo finite element methods for stochastic elliptic variational inequalities. SIAM Journal on Numerical Analysis, 52 (3). pp. 1243-1268. ISSN 0036-1429

Langfeld, B. and Mischau, A. (2014) Strukturen, Kulturen und Spielregeln. Faktoren erfolgreicher Berufsverläufe von Frauen und Männern in MINT. In: Schriften zur interdisziplinären Frauen- und Geschlechterforschung. Nomos. ISBN 978-3-8487-1339-4

Langfeldt, B. and Mischau, A. and Reith, F. and Griffith, K. (2014) Leistung ist Silber, Anerkennung ist Gold. Geschlechterunterschiede im beruflichen Erfolg von MathematikerInnen und PhysikerInnen. In: Strukturen, Kulturen und Spielregeln. Faktoren erfolgreicher Berufsverläufe von Frauen und Männern in MINT. Schriften zur interdisziplinären Frauen- und Geschlechterforschung (10). Nomos, pp. 76-111. ISBN 978-3-8487-1339-4

Latorre, J.C. and Kramer, P. R. and Pavliotis, G. A. (2014) Numerical methods for computing effective transport properties of flashing Brownian motors. Journal of Computational Physics, 257 (Part A). pp. 57-82. ISSN 0021-9991

Lie, Han Cheng and Schütte, Ch. and Hartmann, C. (2014) Martingale-based gradient descent algorithm for estimating free energy values of diffusions. SIAM J. Sci. Comput. . ISSN 1064-8275 (Submitted)

Manz, J. and Schild, A and Schmidt, B. and Yonggang, Y (2014) Maximum tunneling velocities in symmetric double well potentials. Chem. Phys., 442 . pp. 9-17.

Matera, S. and Maestri, M. and Cuoci, A. and Reuter, K. (2014) Predictive-Quality Surface Reaction Chemistry in Real Reactor Models: Integrating First-Principles Kinetic Monte Carlo Simulations into Computational Fluid Dynamics. ACS Catalysis, 4 (11). pp. 4081-4092.

Meixenberger, K. and Hauser, A. and Jansen, K. and Yousef, K. P. and Fiedler, S. and von Kleist, M. and Norley, S. and Somogyi, S. and Hamouda, O. and Bannert, N. and Bartmeyer, B. and Kücherer, C. (2014) Assessment of ambiguous base calls in HIV-1 pol population sequences as a biomarker to identify recent infections in HIV-1 incidence studies. Journal of Clinical Microbiology, 52 (8). pp. 2977-2983. ISSN 0095-1137

Meixenberger, K. and Yousef, K. P. and Somogyi, S. and Fiedler, S. and Bartmeyer, B. and von Kleist, M. and Kücherer, C. (2014) Characterization of natural polymorphic sites of the HIV-1 integrase before the introduction of HIV-1 integrase inhibitors in Germany. J Int AIDS Soc., 17 (4 Suppl 3). p. 19746.

Mey, A.S.J.S. and Wu, H. and Noé, F. (2014) xTRAM: Estimating equilibrium expectations from time-correlated simulation data at multiple thermodynamic states. Phys. Rev. X, 4 (4). 041018.

Mischau, A. and Bohnet, K. (2014) Mathematik „anders“ lehren und lernen. In: Gender – Schule – Diversität. Tectum Verlag, Marburg, pp. 99-126. ISBN 978-3-8288-3448-4

Muehlhans, S. and von Kleist, M. and Gretchuka, T and Martin, T. and Fegeler, U. and Maurer, W. and Namazova-Baranova, L. and Gaedicke, G. and Baranov, A. and Rath , B. (2014) Awareness and Utilization of Standards and Pathways for the Reporting of Adverse Events Following Immunization among Pediatricians in Russia and Germany. Pediatric Drugs, 16 (4). pp. 31-330. ISSN 1174-5878 (Print) 1179-2019 (Online)

Muraschko, J and Fruman, M. D. and Achatz, U. and Hickel, S. and Toledo, Y. (2014) On the application of WKB theory for the simulation of the weakly nonlinear dynamics of gravity waves. Quarterly Journal of the Royal Meteorological Society .

Neu, V. and Bielow, C. and Reinert, K. and Huber, C. G. (2014) Ultrahigh-performance liquid chromatography-ultraviolet absorbance detection-high-resolution-mass spectrometry combined with automated data processing for studying the kinetics of oxidative thermal degradation of thyroxine in the solid state. Journal of chromatography A, 1371 . pp. 196-203.

Noé, F. and Chodera, J. D. (2014) Uncertainty Estimation. In: An Introduction to Markov State Models and Their Application to Long Timescale Molecular Simulation. Advances in Experimental Medicine and Biology, 797 . Springer, pp. 61-74.

Noé, F. and Prinz, J.-H. (2014) Analysis of Markov Models. In: An Introduction to Markov State Models and Their Application to Long Timescale Molecular Simulation. Advances in Experimental Medicine and Biology, 797 . Springer, pp. 75-90.

Nüske, F. and Keller, B. and Pérez-Hernández, G. and Mey, A.S.J.S. and Noé, F. (2014) Variational Approach to Molecular Kinetics. J. Chem. Theory Comput., 10 . pp. 1739-1752.

O'Neill, W.P. and Klein, R. (2014) A moist pseudo-incompressible model. Atmospheric Research, 142 (1). pp. 133-141.

Oevermann, M. and Klein, R. (2014) An asymptotic solution approach for elliptic equations with discontinuous coefficients. Journal of Computational Physics, 261 . pp. 230-243.

Parsa, A. M. and Kozhan, I. and Wulkow, M. and Hutchinson, R. A. (2014) Modeling of Functional Group Distribution in Copolymerization: A Comparison of Deterministic and Stochastic Approaches. Macromolecular Theory and Simulations, 23 (3). pp. 207-217. ISSN 10221344

Plattner, N. and Meuwly, M. (2014) The effect of classical and quantum dynamics on vibrational frequency shifts of H2 in clathrate hydrates. The Journal of Chemical Physics, 140 (2). 024311. ISSN 0021-9606

Pluharova, E. and Baer, M. and Mundy, Ch. and Schmidt, B. and Jungwirth, P. (2014) Aqueous Cation-Amide Binding: Free Energies and IR Spectral Signatures by Ab Initio Molecular Dynamics. J. Phys. Chem. Lett., 5 (13). pp. 2235-2240.

Prinz, J.-H. and Chodera, J. D. and Noé, F. (2014) Estimation and Validation of Markov Models. In: An Introduction to Markov State Models and Their Application to Long Timescale Molecular Simulation. Advances in Experimental Medicine and Biology , 797 . Springer, pp. 45-60.

Prinz, J.-H. and Chodera, J. D. and Noé, F. (2014) Spectral rate theory for two-state kinetics. Phys Rev X, 4 . 011020.

Queck, R. and Bernhofer, C. and Bienert, A. and Eipper, T. and Goldberg, V. and Harmansa, S. and Hildebrand, V. and Maas, H.-G and Schlegel, F. and Stiller, J. (2014) TurbEFA: an interdisciplinary effort to investigate the turbulent flow across a forest clearing. Meteorologische Zeitschrift, 1 .

Queck, R. and Bernhofer, C. and Goldberg, V. and Harmansa, S. and Bienert, A. and Maas, H.-G and Schlegel, F. and Stiller, J. and Eipper, T. and Hildebrand, V. (2014) TurbEFA: Ein interdisziplinärer Ansatz zur Untersuchung der turbulenten Strömung an einer Waldlichtung. In: 8. Biomet Tagung "Mensch-Pflanze-Atmosphäre im 21. Jahrhundert", 2.-3.12.14, Dresden.

Rahn, R. and Weese, D. and Reinert, K. (2014) Journaled string tree--a scalable data structure for analyzing thousands of similar genomes on your laptop. Bioinformatics . ISSN Online ISSN 1460-2059 - Print ISSN 1367-4803

Reith, F. and Langfeldt, B. and Griffiths, K. and Mischau, A. (2014) Geschlechterunterschiede in der Selbstpräsentation und der Vernetzung als ausgewählte Karrierestrategien von MathematikerInnen und PhysikerInnen in Wissenschaft und Wirtschaft. In: Karriereverläufe in Forschung und Entwicklung. Bedingungen und Perspektiven im Spannungsfeld von Organisation und Individuum. Logos, pp. 250-270. ISBN 978-3-8325-3587-2

Remmler, S. and Hickel, S. (2014) Spectral eddy viscosity of stratified turbulence. Journal of Fluid Mechanics . (In Press)

Sander, O. and Schiela, A. (2014) Variational analysis of the coupling between a geometrically exact Cosserat rod and an elastic continuum. Zeitschrift für Angewandte Mathematik und Physik (ZAMP), 65 (6). pp. 1261-1288. ISSN 0044-2275 (Print) 1420-9039 (Online)

Sarich, M. and Banisch, Ralf and Hartmann, C. and Schütte, Ch. (2014) Markov State Models for Rare Events in Molecular Dynamics. In: Molecular Dynamics Simulation. MDPI AG, Basel, pp. 250-279. ISBN 978-3-906980-65-2

Sarich, M. and Prinz, J.-H. and Schütte, Ch. (2014) Markov Model Theory. In: An Introduction to Markov State Models and Their Application to Long Timescale Molecular Simulation. Advances in Experimental Medicine and Biology, 797 (797). Springer, Dordrecht, Heidelberg, New York, London, pp. 23-44. ISBN 978-94-007-7605-0

Sarich, M. and Djurdjevac, N. and Bruckner, S. and Conrad, T. O. F. and Schütte, Ch. (2014) Modularity revisited: A novel dynamics-based concept for decomposing complex networks. Journal of Computational Dynamics, 1 (1). pp. 191-212. ISSN 2158-2491

Schillings, Claudia and Schulz, Volker (2014) On the influence of robustness measures on shape optimization with stochastic uncertainties. Optimization and Engineering, 16 . pp. 347-386. ISSN 1573-2924; Print 1389-4420

Schillings, Claudia and Schwab, Christoph (2014) Sparsity in Bayesian inversion of parametric operator equations. Inverse Problems, 30 (6).

Schlutow, M. and Becker, E. and Körnich, H. (2014) Positive definite and mass conserving tracer transport in spectral GCMs. Journal of Geophysical Research Atmospheres .

Schmidt, B. and Friedrich, B. (2014) Supersymmetry and eigensurface topology of the planar quantum pendulum. Front. Physics, 2 . p. 37.

Schmidt, B. and Lorenz, U. (2014) WavePacket 5.0: A Matlab program package for quantum-mechanical wavepacket propagation and time-dependent spectroscopy. Freely available at SourceForge.net.

Schmidt, B. and Friedrich, B. (2014) Topology of surfaces for molecular Stark energy, alignment and orientation generated by combined permanent and induced electric dipole interactions. J. Chem. Phys., 140 (6). 064317.

Schulz, M. H. and Weese, D. and Holtgrewe, M. and Dimitrova, V. and Niu, S. and Reinert, K. and Richard, H. (2014) Fiona: a parallel and automatic strategy for read error correction. Bioinformatics, 30 (17). i356-i363.

Schöneberg, J. and Heck, M. and Hofmann, K. P. and Noé, F. (2014) Explicit Spatio-temporal Simulation of Receptor-G Protein Coupling in Rod Cell Disk Membranes. Biophys. J., 107 . pp. 1042-1053. ISSN 00063495

Schöneberg, J. and Ullrich, Alexander and Noé, F. (2014) Simulation tools for particle-based reaction-diffusion dynamics in continuous space. BMC Biophysics, 7 . p. 11.

Schütte, Ch. and Conrad, T. O. F. (2014) Showcase 3: Information-based medicine. In: MATHEON : mathematics for key technologies. EMS Series in Industrial and Applied Mathematics, 1 . EMS Publishing House, Zürich, pp. 66-67. ISBN 978-3-03719-137-8

Schütte, Ch. and Deuflhard, P. (2014) Life sciences. In: MATHEON : mathematics for key technologies. EMS series in industrial and applied mathematics, 1 . EMS Publishing House, Zürich, pp. 1-6. ISBN 978-3-03719-137-8

Schütte, Ch. and Deuflhard, P. and Noé, F. and Weber, M. (2014) Design of functional molecules. In: MATHEON : mathematics for key technologies. EMS series in industrial and applied mathematics, 1 . EMS Publishing House, Zürich, pp. 49-65. ISBN 978-3-03719-137-8

Siewert, C. and Bordás, R. and Wacker, U. and Beheng, K.D. and Kunnen, R. P. J. and Meinke, M. and Schröder, W. and Thévenin, D. (2014) Influence of turbulence on the drop growth in warm clouds, Part I: comparison of numerically and experimentally determined collision kernels. Meteorologische Zeitschrift, 23 (4). 397 -410.

Trappe, K. and Emde, A.-K. and Ehrlich, H.-C. and Reinert, K. (2014) Gustaf: Detecting and correctly classifying SVs in the NGS twilight zone. Bioinformatics, 30 (24). pp. 3484-3490. ISSN 1367-4803

Vater, S. and Behrens, J. (2014) Well-Balanced Inundation Modeling for Shallow-Water Flows with Discontinuous Galerkin Schemes. In: Finite Volumes for Complex Applications VII-Elliptic, Parabolic and Hyperbolic Problems. Springer Proceedings in Mathematics & Statistics, 78 . Springer, pp. 965-973. ISBN 978-3-319-05590-9; Online: 978-3-319-05591-6

Vercauteren, N. and Lyon, S.W. and Destouni, G. (2014) Seasonal influence of insolation on fine-resolved air temperature variation and snowmelt. Journal of Applied Meteorology and Climatology, 53 (2). pp. 323-332. ISSN Online: 1558-8432 Print: 1558-8424

Vetter, A. and Sander, O. and Duda, G. and Weinkamer, R. (2014) Healing of a mechano-responsive material. Europhysics Letters (EPL), 104 (6). pp. 1-6. ISSN 0295-5075

Vincze, M. and Borchert, S. and Achatz, U. and von Larcher, T. and Baumann, M. and Hertel, C. and Remmler, S. and Beck, T. and Alexandrov, K. and Egbers, C. and Froehlich, J. and Heuveline , V. and Hickel, S. and Harlander, U. (2014) Benchmarking in a rotating annulus: a comparative experimental and numerical study of baroclinic wave dynamics. Meteorologische Zeitschrift .

Vincze, M. and Harlander, U. and von Larcher, T. and Egbers, C. (2014) An experimental study of regime transitions in a differentially heated baroclinic annulus with flat and sloping bottom topographies. Nonlinear Processes in Geophysics, 21 . pp. 237-250.

Vollmer, J. and Papke, A. and Rohloff, M. (2014) Ripening and Focusing of Aggregate Size Distributions with Overall Volume Growth. Frontiers in Physics, 2 (18).

Waidmann, M. and Gerber, S. and Oevermann, M. and Klein, R. (2014) A Conservative Coupling of Level-Set, Volume-of-Fluid and Other Conserved Quantities. In: Finite Volumes for Complex Applications VII Methods and Theoretical Aspects. Proceedings in Mathematics & Statistics, 77 . Springer , pp. 457-465. ISBN 978-3-319-05683-8

Walzer, M. and Pernas, L. E. and Nasso, S. and Bittremieux, W. and Nahnsen, S. and Kelchtermans, P. and Pichler, P. and van den Toorn, H. W. P. and Staes, A. and Vandenbussche, J. and Mazanek, M. and Taus, T. and Scheltema, R. A. and Kelstrup, C. D. and Gatto, L. and van Breukelen, B. and Aiche, S. and Valkenborg, D. and Laukens, K. and Lilley, K. S. and Olsen, J. V. and Heck, A. J. R. and Mechtler, K. and Aebersold, R. and Gevaert, K. and Vizcaino, J. A. and Hermjakob, H. and Kohlbacher, O. and Martens, L. (2014) qcML: An Exchange Format for Quality Control Metrics from Mass Spectrometry Experiments. Molecular & Cellular Proteomics, 13 (8). pp. 1905-1913. ISSN 1535-9476

Wandelt, S. and Deng, D. and Gerdjikov, S. and Mishra, S. and Mitankin, P. and Patil, M. and Siragusa, E. and Tiskin, A. and Wang, W. and Wang, J. and Leser, U. (2014) State-of-the-art in String Similarity Search and Join. SIGMOD Record, 43 (1).

Wang, H. and Schütte, Ch. and Ciccotti, G. and Delle Site, L. (2014) Exploring the conformational dynamics of alanine dipeptide in solution subjected to an external electric field: A nonequilibrium molecular dynamics simulation. Journal of Chemical Theory and Computation, 10 (4). pp. 1376-1386. ISSN 1549-9618

Winkelmann, S. and Schütte, Ch. and von Kleist, M. (2014) Markov Control Processes with Rare State Observation: Theory and Application to Treatment Scheduling in HIV-1. Communications in Mathematical Sciences, 12 (5). pp. 859-877. ISSN 1539-6746

Wu, H. and Mey, A.S.J.S. and Rosta, E. and Noé, F. (2014) Statistically optimal analysis of state-discretized trajectory data from multiple thermodynamic states. J. Chem. Phys., 141 (21). p. 214106.

Wu, H. and Noé, F. (2014) Optimal estimation of free energies and stationary densities from multiple biased simulations. SIAM Multiscale Model. Simul., 12 . pp. 25-54.

Yelash, L. and Müller, A. and Lukacova-Medvidova, M. and Giraldo, F.X. and Wirth, V. (2014) Adaptive discontinuous evolution Galerkin method for dry atmospheric flow. Journal of Computational Physics, 268C . 106 -133. ISSN 0021-9991

Zerck, Alexandra (2014) Optimal precursor ion selection for LC-MS/MS based proteomics. PhD thesis, Freie Universität Berlin.

Zhang, W. and Wang, H. and Hartmann, C. and Weber, M. and Schütte, Ch. (2014) Applications of the cross-entropy method to importance sampling and optimal control of diffusions. SIAM J. Sci. Comput., 36 (6). A2654-A2672. ISSN 1064-8275

Zhu, J. and Zhang, P. and Wang, H. and Delle Site, L. (2014) Is there a third order phase transition for supercritical fluids? The Journal of Chemical Physics, 140 (1). 014502. ISSN 00219606

Ziemer, C. and Jasor, G. and Wacker, U. and Beheng, K.D. and Polifke, W. (2014) Quantitative comparison of presumed number density and quadrature moment methods for the parameterisation of drop sedimentation. Meteorologische Zeitschrift, 23 (4). pp. 411-423.

Ziemer, C. and Wacker, U. (2014) A Comparative Study of B , Γ and Log Normal Distributions in a Three Moment Parameterization for Drop Sedimentation. Atmosphere, 5 (3). pp. 484-517.

Ziemer, C. and Wacker, U. (2014) A Comparative Study of B-, Γ- and Log-Normal Distributions in a Three-Moment Parameterization for Drop Sedimentation. Atmosphere, 5 (3). pp. 484-517. ISSN 2073-4433

de Wiljes, J. and Putzig, L. and Horenko, I. (2014) Discrete nonhomogeneous and nonstationary logistic and Markov regression models for spatiotemporal data with unresolved external influences. Communications in Applied Mathematics & Computational Science, 9 . pp. 1-46. ISSN 1559-3940

van der Velde, Y. and Vercauteren, N. and Jaramillo, F. and Dekker, S.C. and Destouni, G. and Lyon, S.W. (2014) Exploring hydroclimatic change disparity via the Budyko framework. Hydrological Processes, 28 (13). pp. 4110-4118. ISSN 1099-1085

von Larcher, T. and Dörnbrack, A. (2014) Numerical simulations of baroclinic driven flows in a thermally driven rotating annulus using the immersed boundary method. Meteorologische Zeitschrift . ISSN 0941-2948

von Larcher, T. and Klein, R. and Horenko, I. and Metzner, Ph. and Waidmann, M. and Igdalov, D. and Beck, A. and Gassner, G. and Munz , C.-D. (2014) Towards a stochastic closure approach for Large Eddy Simulation. In: Finite Volumes for Complex Applications VII-Elliptic, Parabolic and Hyperbolic Problems. Springer International Publishing, pp. 883-890. ISBN ISBN 978-3-319-06402-4

von Rudorff, G. F. and Wehmeyer, C. and Sebastiani, D. (2014) Efficient implementation and application of the artificial bee colony algorithm to low-dimensional optimization problems. Computer Physics Communications, 185 (6). p. 1639. ISSN 00104655