Items where Year is 2010

A

Achatz, U. and Klein, R. and Senf, F. (2010) Gravity waves, scale asymptotics, and the pseudo-incompressible equations. Journal of Fluid Mechanics, 663 . pp. 120-147.

Alber, I. and Ransiek, A. (2010) Tagungsbericht XVII ISA World Congress of Sociology „Sociology on the move“. In: World Congress of Sociology „Sociology on the move", 11-17 July 2010, Göteborg, Schweden.

Alexandrov, K. and Harlander, U. and Egbers, C. (2010) Definition und Vergleich von Zuständen eines rotierenden Zylinderspalts unter Betrachtung skalenseparierter Strömungsstrukturen. In: 18. Fachtagung Lasermethoden in der Strömungsmesstechnik , 7-9. September 2010, Cottbus.

Assmann, M. and Pérez-Hernández, G. and González, L. (2010) On the Light-Driven Isomerization of a Model Asymmetric Molecular Rotor: Conformations and Conical Intersections of 2-Cyclopentylidene-tetrahydrofuran. The Journal of Physical Chemistry A, 114 (34). pp. 9342-9348. ISSN 1089-5639

Assmann, M. and Sanz, C. S. and Pérez-Hernández, G. and Worth, G. A. and González, L. (2010) Excited state dynamics of a model asymmetric molecular rotor: A five-dimensional study on 2-cyclopentylidene-tetrahydrofuran. Chemical Physics, 377 (1-3). pp. 86-95. ISSN 03010104

B

Bastian, G and Vogelsang, A and Schiffmann, C (2010) Isotopic Superlattices for Perfect Phonon Reflection. Journal of Electronic Materials, 39 (9). p. 1769. ISSN 0361-5235

Bastian, P. and Buse, G. and Sander, O. (2010) Infrastructure for the Coupling of Dune Grids. In: Numerical Mathematics and Advanced Applications 2009: Proceedings of ENUMATH 2009. Springer Berlin Heidelberg, pp. 107-114. ISBN 978-3-642-11794-7

Bastigkeit, I. and Fischer , R. and Leitl, B. and Schatzmann, M. (2010) Fundamental quality requirements for the generation of LES-specific validation data sets from systematic wind tunnel model experiments. In: Fifth International Symposium on Computational Wind Engineering (CWE2010), May 23-27, 2010, Chapel Hill, North Carolina, USA. (Unpublished)

Baumann, M. and Heuveline , V. (2010) Evaluation of Different Strategies for Goal Oriented Adaptivity in CFD - Part I: The Stationary Case. Preprint Series of the Engineering Mathematics and Computing Lab, 2010-05 .

Bernhard, S. and Al Zoukra, K. and Schütte, Ch. (2010) From non-invasive hemodynamic measurements towards patient-specific cardiovascular diagnosis. In: Quality Assurance in Healthcare Service Delivery, Nursing and Personalized Medicine. Hershey, PA: Medical Information Science Reference. (Submitted)

Bernhard, S. and Noé, F. (2010) Optimal Identification of Semi-Rigid Domains in Macromolecules from Molecular Dynamics Simulation. PLoS One, 5 . e10491.

Berninger, H. and Sander, O. (2010) Substructuring of a Signorini-type problem and Robin's method for the Richards equation in heterogeneous soil. Computing and Visualization in Science, 13 (5). pp. 187-205. ISSN 1432-9360

Bielow, C. and Ruzek, S. and Huber, C. and Reinert, K. (2010) Optimal Decharging and Clustering of Charge Ladders Generated in ESI−MS. J. Proteome Res., 9 (5). pp. 2688-2695. ISSN 1535-3893

Bienert, A. and Queck, R. and Schmidt, A. and Bernhofer, C. and Maas, H.-G (2010) Voxel space analysis of terrestrial laser scans in forests for wind field modelling. International Archives of Photogrammetry.Remote Sensing and Spatial Information Sciences, 38 (5). pp. 92-97.

Bienert, A. and Stiel, B. and Queck, R. and Maas, H.-G (2010) Photogrammetrische Bestimmung von statischen und dynamischen Verformungsstrukturen an Einzelbäumen. Allgemeine Vermessungs-Nachrichten, 5 . 190-197..

Birn, M. and Holtgrewe, M. and Sanders, P. and Singler, J. (2010) Simple and Fast Nearest Neighbor Search. 2010 Proceedings of the Twelfth Workshop on Algorithm Engineering and Experiments (ALENEX) . pp. 43-54.

Bordás, R. and Hagemeier, T. and Thévenin, D. (2010) Experimental Investigation of Droplet-Droplet Interactions. 23rd European Conference on Liquid Atomization and Spray Systems . 198.1-198.6. ISSN 978-80-7399-997-1

Borzì, Alfio and Schulz, Volker H. and Schillings, Claudia and von Winckel, Gregory (2010) On the treatment of distributed uncertainties in PDE‐constrained optimization. GAMM-Mitteilungen, 33 (2). pp. 230-246.

C

Chodera, J. D. and Noé, F. (2010) Probability distributions of molecular observables computed from Markov models. II: Uncertainties in observables and their time-evolution. J. Chem. Phys, 133 (10). p. 105102.

D

Dedner, A. and Klöfkorn, R. and Nolte, M. and Ohlberger, M. (2010) A generic interface for parallel and adaptive discretization schemes: Abstraction principles and the DUNE-FEM module. Computing, 90 (3-4). pp. 165-196.

Devanathan, R. and Venkatnathan, A. and Rousseau, R. and Dupuis, M. and Frigato, T. and Gu, W. and Helms, V. (2010) Atomistic Simulation of Water Percolation and Proton Hopping in Nafion Fuel Cell Membrane. J. Phys. Chem. B, 114 (43). pp. 13681-13690.

Diederichs, E. and Juditski, A. and Spokoiny, V. and Schütte, Ch. (2010) Sparse Non-Gaussian Component Analysis. IEEE Transactions on Information Theory, 56 (6). pp. 3033-3047. ISSN 0018-9448

Djurdjevac, N. and Sarich, M. and Schütte, Ch. (2010) On Markov State Models for Metastable Processes. In: ICM 2010.

de Souza, L.G.M. and Janiga, G and John, V. and Thévenin, D. (2010) Reconstruction of a distribution from a finite number of moments with an adaptive spline-based algorithm. Chemical Engineering Science, 65 (9). pp. 2741-2750.

E

Emde, A.-K. and Grunert, M. and Weese, D. and Reinert, K. and Sperling, S. R. (2010) MicroRazerS: Rapid alignment of small RNA reads. Bioinformatics, 26 (1). pp. 123-124. ISSN 1367-4803

F

Fischer , R. and Bastigkeit, I. and Leitl, B. and Schatzmann, M. (2010) Generation of spatio-temporally high resolved datasets for the validation of LES-models simulating flow and dispersion phenomena within the lower atmospheric boundary layer. In: Fifth International Symposium on Computational Wind Engineering (CWE2010), May 23-27, 2010, Chapel Hill, North Carolina, USA. (Unpublished)

Flamm, Christoph and Ullrich, Alexander and Hofacker, L. Ivo and Stadler, Peter F. (2010) Evolution of Metabolic Networks: A Computational Framework. Journal of Systems Chemistry, 1 (4).

Forster, R. and Kornhuber, R. (2010) A polynomial chaos approach to stochastic variational inequalities. Journal of Numerical Mathematics, 18 (4). pp. 235-255. ISSN 1570-2820

G

Gogol-Döring, A. and Reinert, K. (2010) Biological Sequence Analysis using the SeqAn C++ Library. Chapman & Hall/CRC Mathematical & Computational Biology (1). CRC Press, Boca Raton, USA. ISBN 9781420076233

Gottermeier, B. and Lang, J. (2010) Adaptive two-step peer methods for thermally coupled incompressible flow. ., Proceedings of V. European Conference on Computational Fluid Dynamics ECCOMAS CFD 2010. (Unpublished)

Gräser, C. and Kornhuber, R. and Sack, U. (2010) On hierarchical error estimators for time-discretized phase field models. In: Numerical Mathematics and Advanced Applications 2009: Proceedings of ENUMATH 2009. Springer Berlin Heidelberg, pp. 397-405. ISBN 978-3-642-11794-7

H

Haack, F. and Röblitz, S. and Scharkoi, O. and Schmidt, B. and Weber, M. (2010) Adaptive spectral clustering for conformation analysis. In: ICNAAM 2010: International Conference of Numerical Analysis and Applied Mathematics. AIP Conf. Proc. (1281). AIP, pp. 1585-1588.

Hartmann, C. and Schütte, Ch. and Ciccotti, G. (2010) On the linear response of mechanical systems with constraints. J. Chem. Phys., 132 (11). p. 111103.

Hartmann, C. and Vulcanov, V.-M. and Schütte, Ch. (2010) Balanced Truncation of Second Order Systems: a Hamiltonian approach. Multiscale Model. Simul., 8 (4). pp. 1348-1367.

Hertel, C. and Fröhlich, J. (2010) Error reduction in LES via adaptive moving grids. In: Quality and Reliability of Large-Eddy Simulations II QLES2009, 9-11 September 2009, Pisa (Italy). (Submitted)

Hertel, C. and Fröhlich, J. (2010) Large-Eddy Simulation with adaptive refinement for the flow over periodic hills. In: DLES8, 07.-09.07.2010, Eindhoven, Niederlande. (In Press)

Hertwig, D. and Leitl, B. and Schatzmann, M. (2010) Organized turbulent structures –- The link between experimental data and LES modeling. In: Fifth International Symposium on Computational Wind Engineering, May 23-27, 2010, Chapel Hill, North Carolina, USA. (Unpublished)

Holtgrewe, M. and Sanders, P. and Schulz, C. (2010) Engineering a scalable high quality graph partitioner. 2010 IEEE International Symposium on Parallel & Distributed Processing (IPDPS) . pp. 1-12. ISSN 1530-2075

Holtgrewe, M. (2010) Mason – A Read Simulator for Second Generation Sequencing Data. Technical Report FU Berlin .

Horenko, I. (2010) Finite Element Approach to Clustering of Multidimensional Time Series. J. Sci. Comp., 32 (1). pp. 62-83.

Horenko, I. (2010) On Clustering of Non-stationary Meteorological Time Series. Dyn. of Atm. and Oc., 49 (2-3). pp. 164-187.

Horenko, I. (2010) Parameter identification in nonstationary Markov chains with external impact and its application to computational sociology. Multiscale Modeling & Simulation . (Submitted)

Horenko, I. (2010) On the identification of non-stationary factor models and their application to atmospherical data analysis. J. Atm. Sci., 67 (5). pp. 1559-1574.

Horenko, I. and Schütte, Ch. (2010) On metastable conformational analysis of non-equilibrium biomolecular time series. Multiscale Modeling & Simulation, 8 (2). pp. 701-716. ISSN 15403467

Huang, W. and Kamenski, L. and Lang, J. (2010) A new anisotropic mesh adaption method based upon hierarchical a posteriori error estimates. J. Comput. Phys., 229 . pp. 2179-2198.

Hüser, D. and Gogol-Döring, A. and Lutter, T. and Weger, S. and Winter, K. and Hammer, E.-M. and Cathomen, T. and Reinert, K. and Heilbronn, R. (2010) Integration Preferences of Wildtype AAV-2 for Consensus Rep-Binding Sites at Numerous Loci in the Human Genome. PLoS Pathogens, 6 (7). e1000985. ISSN 1553-7374

J

Jebens, .S. and Knoth, O. and Arnold, M. and Weiner, R. (2010) Linearly implicit peer methods for the compressible Euler equations. Applied Numerical Mathematics . (Submitted)

K

Kavalar, Martin (2010) Conformational Dynamics of a Peptide Ligand in Solvent and in Complex with a MHC-I Protein. Masters thesis, FU Berlin.

Keller, B. and Gattin, Z. and van Gunsteren, W. F. (2010) What stabilizes the 3_14-helix in beta^3-peptides? A conformational analysis using molecular simulation. PROTEINS: Structure, Function, and Bioinformatics, 78 (7). pp. 1677-1690.

Kenfack, A. and Marquardt, F. and Paramonov, G. K. and Barth, I. and Lasser, C. and Paulus, B. (2010) Initial-state dependence of coupled electronic and nuclear fluxes in molecules. Phys. Rev. A, 81 (5). 052502.

Klein, R. (2010) On the regime of validity of sound-proof model equations for atmospheric flows. In: ECMWF, Non-hydrostatic Modelling Workshop, November 2010, Reading UK.

Klein, R. (2010) Scale-Dependent Asymptotic Models for Atmospheric Flows. Annual Review of Fluid Mechanics, 42 . pp. 249-274.

Klein, R. and Achatz, U. and Bresch, D. and Knio, O.M. and Smolarkiewicz, P. (2010) Regime of Validity of Sound-Proof Atmospheric Flow Models. Journal of the Atmospheric Sciences, 67 (10). pp. 3226-3237. ISSN Online: 1520-0469 Print: 0022-4928

Kornhuber, R. (2010) Mathematik hilft heilen. In: Wissenschaftsstadt Berlin. Berliner Wirtschaftsgespräche e.V., p. 123.

L

Latorre, J.C. and Hartmann, C. and Schütte, Ch. (2010) Free energy computation by controlled Langevin processes. Procedia Computer Science, 1 (1). pp. 1591-1600.

M

Marsalek, O. and Frigato, T. and VandeVondele, J. and Bradforth, P. E. and Schmidt, B. and Schütte, Ch. and Jungwirth, P. (2010) Hydrogen Forms in Water by Proton Transfer to a Distorted Electron. J. Phys. Chem. B, 114 (2). pp. 915-920.

Marsalek, O. and Uhlig, F. and Frigato, T. and Schmidt, B. and Jungwirth, P. (2010) Dynamics of Electron Localization in Warm vs. Cold Water Clusters. Phys. Rev. Lett., 105 (4). 043002.

Matera, S. and Reuter, K. (2010) Transport limitations and bistability for in situ CO oxidation at RuO 2(110): First-principles based multiscale modeling. Physical Review B, 82 (8). 085446.

Menz, St. and Matthiesen, R. and Dehmel, Ch. and Barembruch, C. and Hengge, R. and Huisinga, W. (2010) Precise Switching of Flagellar Gene Expression in Escherichia Coli by the FlgM–FliA Regulatory Network. PLoS Computational Biology . (Submitted)

Metzner, Ph. and Weber, M. and Schütte, Ch. (2010) Observation Uncertainty in Reversible Markov Chains. Phys. Rev. E, 82 (3). 031114.

Mischau, A. (2010) Doing gender by doing mathematics? – Frauen und Männer im Mathematikstudium. In: Geschlechterforschung in Mathematik und Informatik. Eine (inter)disziplinäre Herausforderung. Schriften des Heidelberger Instituts für Interdisziplinäre Frauenforschung (HIFI) (8). Nomos Verlag, Interdisziplinäres Zentrum für Geschlechterforschung (IZG), pp. 19-35. ISBN 978-3-8329-4537-4

Mischau, A. and Neuß, S. and Lehmann, J. (2010) Die Promotion als erste Etappe einer akademischen Laufbahn. MathematikerInnen und InformatikerInnen im Vergleich. In: Geschlechterforschung in Mathematik und Informatik. Eine (inter)disziplinäre Herausforderung. Schriften des Heidelberger Instituts für Interdisziplinäre Frauenforschung (HIFI) (8). Nomos Verlag, pp. 63-86. ISBN 978-3-8329-4537-4

Moeck, J. and Scharfenberg , C. and Paschereit, O. C. and Klein, R. (2010) A zero-Mach solver and reduced order acoustic representations for modeling and control of combustion instabilities. Active Flow Control II, Notes on Numerical Fluid Mechanics and Multidisciplinary Design,, 108/2010 . pp. 291-306. ISSN 978-3-642-11734-3

Mueller, A. and Behrens, J. and Giraldo, F.X. and Wirth, V. (2010) An adaptive discontinuous Galerkin method for modeling cumulus clouds. In: Fifth European Conference on Computational Fluid Dynamics, ECCOMAS CFD 2010, 14-17 June 2010, Lisbon, Portugal. (Submitted)

Münch, M. (2010) Brandschutzaufklärung mit mathematischen Simulationsprogrammen: Wie Mathematik hilft, Ihr Leben zu retten! Schadenprisma - Zeitschrift für Schadenverhütung und Schadenforschung der öffentlichen Versicherer, 4 . pp. 16-19.

Münch, M. (2010) Fast and correct computation. A comprehensive test concept to proof the new FDS-ScaRC technique. 11th International Symposium on Fire Protection . 11 p.. ISSN 978-3-00-03966-2

Münch, M. and Kilian, S. (2010) A new generalized domain decomposition strategy for the efficient parallel solution of the FDS-pressure equation, Part II: Verification and Validation. ZIB-Report, ZR_09-20 . 40p.. ISSN 1438-0064

O

Owschimikow, N. and Königsmann, F. and Maurer, J. and Giese, Ph. and Ott, A. and Schmidt, B. and Schwentner, N. (2010) Cross sections for rotational decoherence of perturbed nitrogen measured via decay of laser-induced alignment. J. Chem. Phys., 133 (4). 044311.

P

Pilari, S. and Preusse, C. and Huisinga, W. (2010) Gestational Influences on the Pharmacokinetics of Gestagenic Drugs: A Combined In Silico, In Vitro and In Vivo Analysis. European Journal of Pharmaceutical Sciences . (Submitted)

Pilari, S. and Huisinga, W. (2010) Lumping of Physiologically-Based Pharmacokinetic Models and a Mechanistic Derivation of Classical Compartmental Models. Journal of Pharmacokinetics and Pharmacodynamics, 37 (4). pp. 365-405.

Plattner, N. and Doll, J. D. and Meuwly, M. (2010) Spatial averaging for small molecule diffusion in condensed phase environments. The Journal of Chemical Physics, 133 (4). 044506. ISSN 00219606

Plattner, N. and Lee, M. W. and Meuwly, M. (2010) Structural and spectroscopic characterization of mixed planetary ices. Faraday discussions, 147 . 217-230; discussion 251. ISSN 1359-6640

Pérez-Hernández, G. and González, L. (2010) Mechanistic insight into light-driven molecular rotors: a conformational search in chiral overcrowded alkenes by a pseudo-random approach. Physical Chemistry Chemical Physics, 12 (38). pp. 12279-12289. ISSN 1463-9076

Pérez-Hernández, G. and Pelzer, A. and González, L. and Seideman, T. (2010) Biologically inspired molecular machines driven by light. Optimal control of a unidirectional rotor. New Journal of Physics, 12 (7). 075007. ISSN 1367-2630

Q

Qu, Z.-W. and Zhu, H. (2010) Do Anionic Titanium Dioxide Nano-Clusters Reach Bulk Band Gap? A Density Functional Theory Study. J. Comp. Chem., 31 (10). pp. 2038-2045.

Queck, R. and Bernhofer, C. (2010) Constructing wind profiles in forests from limited measurements of wind and vegetation structure. Agricultural and Forest Meteorology .

Queck, R. and Bienert, A. and Eipper, T. (2010) Sturmsicherer Wald. ARD.

R

Rausch, Tobias (2010) Dissecting multiple sequence alignment methods. PhD thesis, Freie Universität Berlin.

Rohrschneider, Markus and Ullrich, Alexander and Kerren, Andreas and Stadler, Peter F. and Scheuermann, Gerik (2010) Visual Network Analysis of Dynamic Metabolic Pathways. Advances in visual computing . pp. 316-327. ISSN 3-642-17288-1

Ruprecht, D. and Klein, R. and Majda, A. J. (2010) Modulation of Internal Gravity Waves in a Multiscale Model for Deep Convection on Mesoscales. Journal.of the Atmospheric Sciences, 67 (8). pp. 2504-2519. ISSN Online 1520-0469, Print 0022-4928

Ruprecht, D. (2010) Analysis of a Multi-Scale Asymptotic Model for Internal Gravity Waves in a Moist Atmosphere. PhD thesis, Freie Universität Berlin.

S

Sander, O. and Schmidt, L. and Ehrig, R. and Heller, M. and Taylor, B. and Kornhuber, R. (2010) Numerical determination of the medio-lateral force distribution in an ovine stifle joint. Biomedizinische Technik/Biomedical Engineering: Proceedings of BMT, Rostock, 55 (s1). ISSN 0013-558

Sander, O. (2010) Geodesic finite elements for Cosserat rods. International Journal for Numerical Methods in Engineering, 82 (13). pp. 1645-1670. ISSN 1097-0207

Sarich, M. and Noé, F. and Schütte, Ch. (2010) On the Approximation Quality of Markov State Models. Multiscale Model. Simul., 8 (4). pp. 1154-1177.

Sarich, M. and Schütte, Ch. and Vanden-Eijnden, E. (2010) Optimal Fuzzy Aggregation of Networks. Multiscale Modeling and Simulation, 8 (4). pp. 1535-1561.

Schiffmann, C and Appert-Rolland, C and Santen, L (2010) Shock dynamics of two-lane driven lattice gases. Journal of Statistical Mechanics: Theory and Experiment, 2010 (06). P06002. ISSN 1742-5468

Schlegel, M. and Knoth, O. and Arnold, M. and Wolke, R (2010) Numerical solution of multiscale problems in atmospheric modeling. Applied Numerical Mathematics . (Submitted)

Schütte, Ch. and Wulkow, M. (2010) A Hybrid Galerkin–Monte-Carlo Approach to Higher-Dimensional Population Balances in Polymerization Kinetics. Macromol. React. Eng., 4 (9-10). pp. 562-577.

Seibert, Johannes (2010) Investigation of the reaction-diffusion processes of rod cell disc membrane photoactivation with single-particle resolution. Masters thesis, FU Berlin.

Spötter, Andreas and Gupta, Pooja and Reinsch , Norbert and Zautke, F. and Bienefeld, Kaspar (2010) Development of a SNP-Assay for varroa tolerance in the honey bee. Apidologie, 41 (6). p. 685. ISSN 0044-8435 (Print) 1297-9678 (Online)

T

Tack, A. (2010) Large Eddy Simulation horizontaler Konvektionswalzen in der atmosphärischen Grenzschicht. ., Interner Bericht, Institut für Strömungsmechanik, TU Dresden, in Kooperation mit dem Finnischen Meteorologischen Institut (FMI). (Unpublished)

U

Ullman, S. and Lang, J. (2010) A POD-Galerkin reduced model with updated coefficients for smagorinsky LES. ., Proceedings of V. European Conference on Computational Fluid Dynamics ECCOMAS CFD 2010. (Submitted)

V

von Kleist, M. and Menz, S. and Huisinga, W. (2010) Drug-Class Specific Impact of Antivirals on the Reproductive Capacity of HIV. Plos Computational Biology, 6 (3). e1000720.

von Larcher, T. and Harlander, U. and Egbers, C. (2010) Untersuchungen von Welleninteraktionen in einer thermisch getriebenen, rotierenden Zylinderspaltströmung mittels LDA und Thermographie. In: 18. GALA-Fachtagung Lasermethoden in der Strömungsmesstechnik, 7.-9. September 2010, Cottbus.

W

Wirth, V. (2010) The dynamics of orographic banner clouds. In: The 90th American Meteorological Society Annual Meeting, 19. Januar 2010, Atlanta, GA, USA. (Unpublished)

Wu, H. and Noé, F. (2010) Maximum a posteriori estimation for Markov chains based on Gaussian Markov random fields. Procedia Computer Science, 1 (1). pp. 1665-1673.

Wu, H. and Noé, F. (2010) Probability Distance Based Compression of Hidden Markov Models. Multiscale Model. Simul., 8 . pp. 1838-1861.

X

Xavier , D. and Keller, B. and van Gunsteren, W. F. (2010) Comparing geometric and kinetic cluster algorithms for molecular simulation data. J. Chem. Phys., 132 (7). 074110.

Z

Zhu, H. and Blom, M. and Compagnon, I. and Rijs, A. M. and Roy, S. and von Helden, G. and Schmidt, B. (2010) Conformations and Vibrational Spectra of a Model Tripeptide: Change of Secondary Structure upon Micro-Solvation. Phys. Chem. Chem. Phys., 12 (14). 3415 -3425.