Items where Year is 2009

A

Altmann, C. and Gassner, G. and Lörcher, F. and Munz , C.-D. (2009) A Space-Time Expansion Discontinuous Galerkin Scheme With Local Time Stepping for the Ideal and Viscous MHD Equations. IEEE Transactions on Plasma Science, 37 (4). 513 -519 .

Audusse, E. and Klein, R. and Owinoh, A.Z. (2009) Conservative Discretization of Coriolis Force. Journal of Computational Physics, 228 (8). pp. 2934-2950.

Azhand, Arash (2009) Diffusion Processes with Hidden States from Single Molecule Experiments. Masters thesis, FU Berlin and TU Berlin.

B

Barth, I. and Lasser, C. (2009) Trigonometric pulse envelopes for laser-induced quantum dynamics. J. Phys. B: At. Mol. Opt. Phys., 42 (23). p. 235101.

Bastigkeit, I. and Hertwig, D. and Leitl, B. and Schatzmann, M. (2009) Quality (and quantity) requirements for compiling LES-specific validation data sets from systematic wind tunnel modeling. In: PHYSMOD 2009 - Proceedings of the Conference on Physical Modelling of Flow and Dispersion Phenomena. von Karman Institute for Fluid Dynamic. ISBN 978-2-930389-42-7

Bauer, R. A. and Rother, K. and Moor, P. and Reinert, K. and Steinke, T. and Bujnicki, J. M. and Preissner, R. (2009) Fast Structural Alignment of Biomolecules Using a Hash Table, N-Grams and String Descriptors. Algorithms and Molecular Sciences, 2 (2). pp. 692-709. ISSN 1999-4893

Belaschk, H.C. and Münch, M. (2009) Anwendung von massiv paralleler Berechnung mit Grafikkarten GPGPU) für CFD-Methoden im Brandschutz. Bauphysik Volume 31 Issue 4, Pages 216 - 226, 31 (4). pp. 216-226.

Berninger, H. (2009) Non-overlapping domain decomposition for the Richards equation via superposition operators. In: Domain Decomposition Methods in Science and Engineering XVIII. Lecture Notes in Computational Science and Engineering, 70 . Springer Berlin Heidelberg, pp. 169-176. ISBN 978-3-642-02676-8

Bordas, R. and Hanke, K. and Bencs, P. and Thévenin, D. (2009) 2D-PIV Measurements in a Two-Phase Wind Tunnel Normal to the Main Flow. In: XXIII. microCAD International Scientific Conference, Miskolc, Hungary.

Bordas, R. and Thévenin, D. (2009) Modeling cumulus clouds in a two-phase wind tunnel. In: EGU General Assembly 2009, Vienna, Austria.

Brdar, S. and Dedner, A. and Klöfkorn, R. and Kränkel, M. and Kröner, D. (2009) Simulation of Geophysical Problems with Dune-Fem. The 4th Russian-German Advanced Research Workshop, 115 . ., Notes on Numerical Fluid Mechanics and Multidisciplinary Design. ISBN 10:3-642-17769-7

C

Carqué, G. (2009) Derivation and Validation of an Asymptotic Column Model for Deep Convective Precipitating Clouds. PhD thesis, Freie Universität Berlin.

D

Dedner, A. and Klöfkorn, R. (2009) Stabilization for discontinuous Galerkin methods applied to systems of conservation laws. Hyperbolic problems. Theory, numerics and applications. Plenary and invited talks, 67 (1). American Mathematical Society, Proceedings of the 12th international conference on hyperbolic problems, 253-268 . ISBN 978-0-8218-4729-9/hbk; 978-0-8218-4728-2/2-vol. set

Devereux, M. and Plattner, N. and Meuwly, M. (2009) Application of Multipolar Charge Models and Molecular Dynamics Simulations to Study Stark Shifts in Inhomogeneous Electric Fields†. The Journal of Physical Chemistry A, 113 (47). pp. 13199-13209. ISSN 1089-5639

Dittmer, E. (2009) Hidden Markov Models with Time-Continuous Output Behavior. PhD thesis, FU Berlin.

Dolaptchiev, S. and Klein, R. (2009) Planetary geostrophic equations for the atmosphere with evolution of the barotropic flow. Dynamics of Atmospheres and Oceans Volume, 46 (1-4). pp. 46-61.

Doll, J. D. and Gubernatis, J. E. and Plattner, N. and Meuwly, M. and Dupuis, P. and Wang, H. (2009) A spatial averaging approach to rare-event sampling. The Journal of Chemical Physics, 131 (10). p. 104107. ISSN 00219606

Dumbser, M. and Gassner, G. and Munz , C.-D. (2009) Discontinuous Galerkin-Verfahren für zeitabhängige Advektions-Diffusions-Gleichungen. Jahresbericht der DMV, 111 (3). pp. 87-123.

F

Fiedler, G. M. and Leichtle, A. and Kase, J. and Baumann, S. and Ceglarek, U. and Felix, K. and Conrad, T. O. F. and Witzigmann, H. and Weimann, A. and Schütte, Ch. and Hauss, J. and Büchler, M. and Thiery, J. (2009) Serum Peptidome Profiling Revealed Platelet Factor 4 as a Potential Discriminating Peptide Associated With Pancreatic Cancer. Clinical Cancer Research, 15 (11). pp. 3812-3819. ISSN 1078-0432

Franzke, Ch. and Horenko, I. and Majda, A. J. and Klein, R. (2009) Systematic Metastable Atmospheric Regime Identification in an AGCM. J. Atm. Sci., 66 (7). pp. 1997-2012.

G

Gassner, G.J. and Lörcher, F. and Munz, C.-D. and Hesthaven, J.-S. (2009) Polymorphic nodal elements and their application in discontinuous Galerkin methods. Journal of Computational Physics, 228 (5). 1573-1590 .

Gerisch, A. and Lang, J. and Podhaisky, H. and Weiner, R. (2009) High-order linearly implicit two-step peer-finite element method for time-dependent PDEs. Applied Numerical Mathematics, 59 (3-4). 624-638 . ISSN 0168-9274

Giorgetta, M. and Hundertmark, T. and Korn, P. and Reich, S. and Restelli, M. (2009) Conservative Space and Time Regularizations for the ICON Model. Reports on Earth System Science, 67 . pp. 1-32. ISSN 1614-1199

Gogol-Döring, Andreas (2009) SeqAn. PhD thesis, Freie Universität Berlin.

Gräfe, Ch. and Nordmeier, V. and Schütte, Ch. (2009) Computerspiel zum Thema Moleküldynamik für Schüler der 7.-10. Klasse, Experimentelles Protyping zur Entwicklung eines Lernspiels. Jahrestagung 2008 der GDCP (Gesellschaft für Didaktik der Chemie und Physik), 1 . pp. 77-79. ISSN 978-3-643-10010-8

Gräfe, Ch. and Schütte, Ch. and Nordmeier, V. (2009) "Learner as creator" - SchülerInnen generieren eigene Lernspiele. In: Didaktik der Physik - Bochum 2009. Lehmanns Media, Berlin. ISBN 978-3-86541-371-0

Gräser, C. and Kornhuber, R. (2009) Multigrid methods for obstacle problems. Journal of Computational Mathematics, 27 (1). pp. 1-44. ISSN 0254-9409

Gräser, C. and Kornhuber, R. (2009) Nonsmooth Newton methods for set-valued saddle point problems. SIAM Journal on Numerical Analysis, 47 (2). pp. 1251-1273. ISSN 0036-1429

Gräser, C. and Sack, U. and Kornhuber, R. (2009) Truncated nonsmooth Newton multigrid methods for convex minimization problems. In: Domain Decomposition Methods in Science and Engineering XVIII. Lecture Notes in Computational Science and Engineering, 70 . Springer Berlin Heidelberg, pp. 129-136. ISBN 978-3-642-02676-8

Gräser, C. and Sander, O. (2009) The dune-subgrid module and some applications. Computing, 86 (4). pp. 269-290. ISSN 0010-485X

H

Harlander, U. and Faulwetter, R. and Alexandrov, K. and Egbers, C. (2009) Estimating local instabilities from data with application to geophysical flows. Advances in Turbulence XII, 132 . Springer, Proceedings in Physics.

Harlander, U. and Ridderinkhof, H. and Schouten, M.W. and de Ruijter, W. P. M (2009) Long-term observations of transport, eddies, and Rossby waves in the Mozambique Channel. JOURNAL OF GEOPHYSICAL RESEARCH, 114 (C02003). 15pp.

Harlander, U. and von Larcher, T. and Wang, Y. and Egbers, C. (2009) PIV- and LDV-measurements of baroclinic wave interactions in a thermally driven rotating annulus. In: EULAG workshop, October 7, 2008, Bad Tölz.

Hartmann, C. (2009) Balancing of dissipative Hamiltonian systems. In: Proceedings of MATHMOD 2009; I. Troch, F. Breitenecker (eds.); ARGESIM Report no. 35.

Hartmann, C. and Schütte, Ch. and Kalibaeva, G. and Di Pierro, M. and Ciccotti, G. (2009) Fast Simulation of Polymer Chains. J. Chem. Phys., 130 . p. 144101.

Hertwig, D. and Bastigkeit, I. and Leitl, B. and Schatzmann, M. (2009) Detecting coherent flow structures within and above a simplified urban roughness. In: PHYSMOD 2009 - Proceedings of the Conference on Physical Modelling of Flow and Dispersion Phenomena. von Karman Institute for Fluid Dynamic. ISBN 978-2-930389-42-7

Hickel, S. and von Terzi, D.A. and Fröhlich, J. (2009) An adaptive local deconvolution method for general curvilinear coordinate systems. Springer Proceedings Physics - Advances in Turbulence XII, 132 (11). pp. 783-786.

Horenko, I. (2009) On robust estimation of low-frequency variability trends in discrete Markovian sequences of atmospherical circulation patterns. The Journal of Atmospherical Sciences, 66 (7). 2059-2072 .

Horenko, I. (2009) On structure-preserving persistent clustering of multivariate time series. Journal of Computational Physics . (Submitted)

Horenko, I. (2009) On metastable conformational analysis of non-equilibrium biomolecular time series. MMS . (Submitted)

I

Ionescu, C. and Klein, R.J.T. and Hinkel, J., and Kavi Kumar, K.S., and Klein, R. (2009) Towards a formal framework for vulnerability to climate change. Environmental Modeling and Assessment, 14 (1). pp. 1-16. ISSN 1420-2026 (Print) 1573-2967 (Online)

J

Jebens, S. and Knoth, O. and Weiner, R. (2009) Explicit Two-Step Peer Methods for the Compressible Euler Equations. Monthly Weather Review, 137 (7). pp. 2380-2392.

Jiménez, C. and Schmidt, H. (2009) Numerical simulation of the response of planar flames to acoustic waves. In: Tercera Reunión de la Sección Española del Instituto de Combustión , 21.-22.Mai 2009, Valladolid, Spain. (Unpublished)

Jiménez, C. and Schmidt, H. (2009) Unsteady response of premixed flames to acoustic pressure pulses under variation of the complexity of the reaction mechanism. In: Fourth European Combustion Meeting (ECM2009), 14 - 17 April 2009, Vienna, Austria. (Unpublished)

K

Keller, B. (2009) Algorithms for the Analysis of Biomolecular Simulations: Ensemble Averages, Marginal Distributions, Clustering and Markov Models. PhD thesis, ETH Zürich.

Kilian, S. and Münch, M. (2009) A new generalized domain decomposition strategy for the efficient parallel solution of the FDS-pressure equation. Part I: Theory, Concept and Implementation. ZIB-Report, 09-19 . 30 pages. ISSN 1438-0064

Klein, R. and Aigner, H. (Hrsg) and Behrends, E. (Hrsg) (2009) Mathematik im Klima des globalen Wandels. In: Alles Mathematik. 3, überarb. Aufl. . Vieweg+Teubner, p. 241. ISBN 978-3-8348-0416-7

Klein, R. and Bates, K.R. and Nikiforakis, N. (2009) Well Balanced Compressible Cut-Cell Simulation of Atmospheric Flow. Philosophical Transaction of the Royal Society, 367 (1907). 4559-4575 . ISSN Online: 1471-2962

Klein, R. (2009) Asymptotics, structure, and integration of sound-proof atmospheric flow equations. Theoretical and Computational Fluid Dynamics, 23 (3). pp. 161-195. ISSN 0935-4964 (Print) 1432-2250 (Online)

Kube, S. and Lasser, C. and Weber, M. (2009) Monte Carlo sampling of Wigner functions and surface hopping quantum dynamics. J. Comp. Phys., 228 (6). pp. 1947-1962.

L

Leibscher, M. and Schmidt, B. (2009) Quantum dynamics of a plane pendulum. Phys. Rev. A, 80 (1). 012510.

Löbig, S. and Dörnbrack, A. and Fröhlich, J. and Hertel, C. and Kühnlein, C. and Lang, J. (2009) Towards Large-Eddy Simulation on moving grids. PAMM · Proc. Appl. Math. Mech., 9 . 445 -446.

Lüdge, Torsten (2009) A theoretical model of conformational transitions in biomolecules based on single-molecule Förster resonance electron transfer measurements. Masters thesis, FU Berlin and TU Berlin.

M

Matera, S. and Reuter, K. (2009) First-Principles Approach to Heat and Mass Transfer Effects in Model Catalyst Studies. Catalysis letters, 133 (1-2). pp. 156-159. ISSN 1011-372X

Meerbach, E. (2009) Off- and Online Detection of Dynamical Phases in Time Series. PhD thesis, Free University of Berlin.

Mei, M. and Leitl, B. and Fischer , R. and Schatzmann, M. (2009) Systematic analysis of puff dispersion in a semi-idealized urban roughness. In: PHYSMOD 2009 - Proceedings of the Conference on Physical Modelling of Flow and Dispersion Phenomena. von Karman Institute for Fluid Dynamic.

Mellado, J.- P. and Schmidt, H. and Stevens, B. and Peters, N. (2009) Analysis of the cloud top mixing layer using DNS. In: The Sixth International Symposium on Turbulence and Shear Flow, 22-24th June 2009, Seoul National University, Korea. (Submitted)

Mellado, J.- P. and Schmidt, H. and Stevens, B. and Peters, N. (2009) Buoyancy reversal in the cloud-top mixing layer. (Submitted)

Mellado, J.- P. and Schmidt, H. and Stevens, B. and Peters, N. (2009) DNS of the turbulent cloud-top mixing layer. In: Advances in Turbulence XII. Springer Proceedings in Physics, Proceedings of the 12th EUROMECH European Turbulence Conference, September 7-10, 2009, Marburg, Germany , pp. 401-404. ISBN ISBN: 978-3-642-03084-0

Mellado, J.- P. and Stevens, B. and Schmidt, H. and Peters, N. (2009) Analysis of latent heat effects in the cloud-top mixing layer. Quarterly Journal of the Royal Meteorological Society, 135 (641). pp. 963-978.

Meskine, H. and Matera, S. and Scheffler, M. and Reuter, K. and Metiu, H. (2009) Examination of the concept of degree of rate control by first-principles kinetic Monte Carlo simulations. Surface Science, 603 (10). pp. 1724-1730.

Metzner, Ph. and Noé, F. and Schütte, Ch. (2009) Estimating the Sampling Error: Distribution of Transition Matrices and Functions of Transition Matrices for Given Trajectory Data. Phys. Rev. E, 80 (2). 021106.

Metzner, Ph. and Schütte, Ch. and Vanden-Eijnden, E. (2009) Transition Path Theory for Markov Jump Processes. Mult. Mod. Sim., 7 (3). pp. 1192-1219.

Moeck, J. and Oevermann, M. and Klein, R. and Paschereit, O. C. and Schmidt, H. (2009) A two-way coupling for modeling thermoacoustic instabilities in a flat flame Rijke tube. Proceedings of the Combustion Institute, 32 (1). pp. 1199-1207.

Münch, M. (2009) Brandsimulationsprogramme - Chancen und Risiken. schadenprisma, Zeitschrift für Schadenverhütung und Schadenforschung der öffentlichen Versicherer, 2 . pp. 14-18.

Münch, M. (2009) Ist eine Gebietszerlegung in mehrere Gitter bei FDS-Simulationen zulässig? In: 2. FDS-Usergroup Treffen, 4.-5. Dezember 2008, hhpberlin, Rotherstr. 19, 10245 Berlin.

Münch, M. (2009) Richtig schnell rechnen. In: 3. FDS-Usergroup Treffen, 29.-30. Oktober 2009, hhpberlin, Rotherstr. 19, 10245 Berlin. (Unpublished)

Münch, M. (2009) Verification and Validation of CFD-Models applied to fire detection. In: 14th International Conference on Automatic Fire Detection, 8.-10. September 2009, Duisburg, Germany.

Münch, M. (2009) Verifikation und Validierung bei der Softwareentwicklung. In: 1. FDS-Usergroup Treffen, 7. März 2008, hhpberlin, Rotherstr. 19, 10245 Berlin.

N

Noé, F. and Schütte, Ch. and Vanden-Eijnden, E. and Reich, L. and Weikl, T. (2009) Constructing the Full Ensemble of Folding Pathways from Short Off-Equilibrium Simulations. Proc. Natl. Acad. Sci. USA, 106 (45). pp. 19011-19016.

O

Oevermann, M. and Scharfenberg , C. and Klein, R. (2009) A sharp interface finite volume method for elliptic equations on Cartesian grids. Journal of Computational Physics, 228 (14). pp. 5184-5206.

Owschimikow, N. and Schwentner, N. and Schmidt, B. (2009) State Selection in Non-Resonantly Excited Wave Packets by Tuning from Non-Adiabatic to Adiabatic Interaction. Phys. Rev. A, 80 (5). 053409.

P

Papke, A. (2009) Mindestens 17 müssen es sein. Junge Wissenschaft, 84 . pp. 24-31.

Pingen, G. and Waidmann, M. and Evgrafov, A. and Maute, K. (2009) A Parametric Level-Set Approach for Topology Optimization of Flow Domains. Structural and Multidisciplinary Optimization . ISSN 1615-147X (Print) 1615-1488 (Online)

Plattner, N. and Meuwly, M. (2009) Higher order multipole moments for molecular dynamics simulations. Journal of Molecular Modeling, 15 (6). pp. 687-694. ISSN 1610-2940

Q

Qu, Z.-W. and Zhu, H. and May, V. and Schinke, R. (2009) Time-Dependent Density Functional Theory Study of the Electronic Excitation Spectra of Chlorophyllide a and Pheophorbide a in Solvents. J. Phys. Chem. B, 113 (14). pp. 4817-4825.

Queck, R. and Bienert, A. (2009) Estimation of PBL model parameters from high resolution vegetation scans. Geophysical Research Abstracts, 11 (EGU2009-10888).

Queck, R. and Bienert, A. and Harmansa, S. (2009) Calculating advective fluxes in tall canopies – Towards better wind speed distribution using 3D vegetation scans in high resolution. In: Atmospheric Transport and Chemistry in Forest Ecosystems, Oct 5 - 8, 2009., Castle of Thurnau.

Queck, R. and Bienert, A. and Harmansa, S. (2009) Modeling wind fields in tall canopies - towards better momentum distribution using 3D vegetation scans in high resolution. In: 2nd International Conference “Wind Effects on Trees”. , 13-16 October 2009, Albert-Ludwigs-University of Freiburg, Germany. (Unpublished)

R

Rausch, T. and Koren, S. and Denisov, G. and Weese, D. and Emde, A.-K. and Döring, A. and Reinert, K. (2009) A consistency-based consensus algorithm for de novo and reference-guided sequence assembly of short reads. Bioinformatics, 25 (9). pp. 1118-1124.

Ruprecht, D. and Klein, R. and Majda, A. J. (2009) Moisture - Gravity Wave Interactions in a Multiscale Environment. Technical Report. Konrad Zuse Zentrum Berlin.

S

Schaedle, A. and Ruprecht, D. and Schmidt, F. (2009) Transparent Boundary Conditions Based on the Pole Condition. In: The 9th International Conference on Mathematical and Numerical Aspects of Waves Propagation, 15th-19th June 2009, Pau, France.

Schatzmann, M. and Leitl, B. (2009) Evaluation of Numerical Flow and Dispersion Models for Applications in Industrial and Urban Areas. Chemical Engineering & Technology, 32 (2). 241 -246.

Schlegel, M. and Knoth, O. and Arnold, M. and Wolke, R (2009) Multirate Runge-Kutta schemes for advection equations. Journal of Computational and Applied Mathematics, 226 (2). pp. 345-357. ISSN 0377-0427

Schmidt, B. and Lorenz, U. (2009) WavePacket 4.7: A Matlab program package for quantum-mechanical wavepacket propagation and time-dependent spectroscopy. Freely available at Sourceforge.net.

Schmidt, H. and Mellado, J.- P. and Peters, N. and Kerstein, A.R. and Stevens, B. (2009) Numerical study of buoyancy reversal in stably stratified flows. Geophysical Research Abstracts, 11 . (Submitted)

Schmidt, H. and Oevermann, M. and Bastiaans, R.J.M. and Kerstein, A.R. (2009) A priori Tabulation of Turbulent Flame Speeds via a Combination of a Stochastic Mixing Model and Flamelet Generated Manifolds, Extended to Incorporate Strain Effects. ZIB Report, 09-09 . ISSN 1438-0064

Schulz-Trieglaff, O. and Machtejevas, E. and Reinert, K. and Schlueter, H. and Thiemann, J. and Unger, K. (2009) Statistical Quality Assessment and Outlier Detection for Liquid Chromatography-Mass Spectrometry Experiments. BioDataMining, 2 (4).

Schulz-Trieglaff, Ole (2009) Computational methods for Quantitative Peptide Mass Spectrometry. PhD thesis, Freie Universität Berlin.

Schütte, Ch. and Noé, F. and Meerbach, E. and Metzner, Ph. and Hartmann, C. (2009) Conformation Dynamics. Proceedings of the 6th International Congress on Industrial and Applied Mathematics, I. Jeltsch and G. Wanner (eds.), . pp. 297-335.

Schütte, Ch. and Jahnke, T. (2009) Towards Effective Dynamics in Complex Systems by Markov Kernel Approximation. Mathematical Modelling and Numerical Analysis (ESAIM), 43 (4). pp. 721-742.

Splettstößer, T. and Noé, F. and Oda, T. and Smith, J. C. (2009) Nucleotide-dependence of G-actin conformation from multiple molecular dynamics simulations and observation of a putatively polymerisation-competent superclosed state. Proteins, 76 . pp. 353-364.

Stenke, A. and Dameris, M. and Grewe, V. and Garny, H. (2009) Implications of Lagrangian transport for simulations with a coupled chemistry-climate model. Atmospheric Chemistry and Physics, 9 . pp. 5489-5504.

Strenziok, R. and Hinz, S. and Wolf, C. and Conrad, T. O. F. and Krause, H. and Miller, K. and Schrader, M. (2009) Surface-enhanced laser desorption/ionization time-of-flight mass spectrometry: serum protein profiling in seminoma patients. World J of Urology, 28 (2). pp. 193-197.

Swart, A. and Manders, A. and Harlander, U. and Maas, U. and Leo , R. M. (2009) Experimental observation of strong mixing due to internal wave focusing over sloping terrain. Dynamics of Atmospheres and Oceans, 50 (1). pp. 16-34.

Swart, T. and Rousse, V. (2009) A Mathematical Justification for the Herman-Kluk Propagator. Comm. Math. Phys., 286 (2). pp. 725-750.

U

Ullrich, Alexander and Forst, Christian V. (2009) k-PathA: k-shortest Path Algorithm. In: High Performance Computational Systems Biology (HiBi 2009), September 2009, Trento, Italy.

V

Vater, S. and Klein, R. (2009) Stability of a Cartesian grid projection method for zero Froude number shallow water flows. Numerische Mathematik, 113 (1). pp. 123-161.

Vercauteren, N. and Bou-Zeid, E. and Huwald, H. and Parlange, M. B. and Brutsaert, W. (2009) Estimation of wet surface evaporation from sensible heat flux measurements. Water Resources Research, 45 (6).

Véron, N. and Bauer, H. and Weiße, A. Y. and Lüder, G. and Werber, M. and Herrmann, B. G. (2009) Retention of gene products in syncytial spermatids promotes non-Mendelian inheritance as revealed by the t complex responder. Genes & Development, 23 (23). 2705-2710 .

von Kleist, M. and Huisinga, W. (2009) Pharmacokinetic–pharmacodynamic relationship of NRTIs and its connection to viral escape: An example based on zidovudine. European Journal of Pharmaceutical Sciences, 36 . pp. 532-543.

von Larcher, T. and Klein, R. (2009) Multiple Scales in Fluid Dynamics and Meteorology - The DFG Priority Programme 1276 MetStröm. In: Newton Institute Scoping Meeting on Multi-scale Modelling of the Atmosphere and Ocean , 25-26 March 2009, University of Reading, UK.

W

Weese, D. and Emde, A.-K. and Rausch, T. and Döring, A. and Reinert, K. (2009) RazerS - Fast Read Mapping with Sensitivity Control. Genome Research, 19 (9). pp. 1646-1654.

Weiße, Andrea Y. (2009) Global Sensitivity Analysis of Ordinary Differential Equations. PhD thesis, FU Berlin.

Wensch, J. and Knoth, O. and Galant, A. (2009) Multirate infinitesimal step methods for atmospheric flow simulation. BIT - Numerical Mathematics, 49 (2). pp. 449-473. ISSN 0006-3835 (Print) 1572-9125 (Online)

Z

Zerck, A. and Nordhoff, E. and Reseman, A. and Mirgorodskaya, E. and Suckau, D. and Reinert, K. and Lehrach, H. and Gobom, J. (2009) An iterative strategy for precursor ion selection for LC-MS/MS based shotgun proteomics. Journal of Proteome Research .

Zhu, H. and May, V. (2009) Mixed Quantum Classical Simulations of Electronic Excitation Energy Transfer and Related Optical Spectra: Supramolecular Pheophorbide-a Complexes in Solution. In: Energy Transfer Dynamics in Biomaterial Systems. Series in Chemical Physics, 93 (http://dx.doi.org/10.1007/978-3-642-02306-4_2). Springer, pp. 35-71. ISBN 978-3-642-02306

Zhu, H. and Röder, B. and May, V. (2009) Time and frequency resolved spontaneous emission from supramolecular pheophorbide-a complexes: A mixed quantum classical computation. Chem. Phys., 362 (1-2). pp. 19-26.