Items where Year is 2025

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Berns, Manon M. M. and Yildiz, Mirza and Winkelmann, Stefanie and Walter, Alexander M. (2025) Independently engaging protein tethers of different length enhance synaptic vesicle trafficking to the plasma membrane. The Journal of Physiology .

Blaskovic, Filip and Conrad, T. O. F. and Klus, Stefan and Djurdjevac Conrad, Natasa (2025) Random walk based snapshot clustering for detecting community dynamics in temporal networks. Scientific Reports, 15 (24414). ISSN 2045-2322

Bostanci, Inan and Conrad, T. O. F. (2025) Integrating Agent-Based and Compartmental Models for Infectious Disease Modeling: A Novel Hybrid Approach. Journal of Artificial Societies and Social Simulation, 28 (1). ISSN 1460-7425

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Cao, Chongsheng and Guo, Yanqiu and Titi, Edriss S. (2025) Analysis of a three-dimensional rapidly rotating convection model without thermal diffusion. arXiv Preprint . (Submitted)

Chemnitz, Robin and Engel, Maximilian and Koltai, Péter (2025) Extracting coherent sets in aperiodically driven flows from generators of Mather semigroups. American Institute of Mathematical Sciences, 30 (6).

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Delle Site, Luigi and Reible, Benedikt M. (2025) Open quantum systems and the grand canonical ensemble. PHYSICAL REVIEW E .

Dixit, Sneha and Noé, Frank and Weikl, Thomas R. (2025) Conformational changes, excess area, and elasticity of the Piezo protein-membrane nanodome from coarse-grained and atomistic simulations. eLife (15).

del Razo, Mauricio J. and Delle Site, Luigi (2025) Dynamics of systems with varying number of particles: From Liouville equations to general master equations for open systems. SciPost Physics, 18 (001).

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Eiter, Thomas and Schindler, Stefanie (2025) Time-asymptotic self-similarity of the damped compressible Euler equations in parabolic scaling variables. arXiv . (Unpublished)

Eiter, Thomas and Schmeller, Leonie (2025) Weak solutions to a model for phase separation coupled with finite-strain viscoelasticity subject to external distortion. Mathematical Models and Methods in Applied Sciences, 35 (11).

Eiter, Thomas and Silvestre, Ana Leonor (2025) Approximation of time-periodic flow past a translating body by flows in bounded domains. arXiv . (Unpublished)

Eiter, Thomas and Silvestre, Ana Leonor (2025) Representation formulas and far-field behavior of time-periodic incompressible viscous flow around a translating rigid body. Nonlinear Differential Equations and Applications, 32 (37).

Erban, Radek and Winkelmann, Stefanie (2025) Multi-Grid Reaction-Diffusion Master Equation: Applications to Morphogen Gradient Modelling. Bulletin of Mathematical Biology, 87 (6).

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Gottlieb, Simon G and Reinert, Knut (2025) SeArcH schemes for Approximate stRing mAtching. NAR Genomics and Bioinformatics, 7 (1).

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Hartmann, Carsten and Neureither, Lara and Sharma, Upanshu (2025) Affine constraints in non-reversible diffusions with degenerate noise. Submitted to SIAM Journal on Applied Dynamical Systems . (Submitted)

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Kaarnioja, Vesa (2025) Explicit solutions of Genz test integrals. Applied Mathematics Letters, 163 . ISSN 08939659

Kaarnioja, Vesa and Klebanov, Ilja and Schillings, Claudia (2025) Lattice Rules Meet Kernel Cubature. arXiv:2501.09500 . (Submitted)

Kaarnioja, Vesa and Sloan, Ian H. (2025) Doubling the rate: improved error bounds for orthogonal projection with application to interpolation. To appear in BIT Numerical Mathematics, 2025. BIT Numerical Mathematics, 65 (10).

Kern, Julian (2025) Weak reservoirs are superexponentially irrelevant for misanthrope processes. Electronic Communications in Probability .

Kern, Julian and Pra, Marta Dai (2025) Multi-type logistic branching processes with selection: frequency process and genealogy for large carrying capacities. arXiv Preprint . (Unpublished)

Kiefer, Henrik and Vitali, Domenico and Dalton, Benjamin A. and Scalfi, Laura and Netz, Roland R. (2025) Effect of frequency-dependent shear and volume viscosities on molecular friction in liquids. APS - Physcial Review E, 111 .

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Liu, Xin and Titi, Edriss S. and Xin, Zhouping (2025) Asymptotic stability of the equilibrium for the free boundary problem of a compressible atmospheric primitive model with physical vacuum. Journal of Differential Equations, 447 .

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Maier, Kristina and Conrad, T. O. F. (2025) A Hybrid ABM-PDE Framework for Real-World Infectious Disease Simulations. SIAM Journal on Applied Mathematics . ISSN 1095-712X (online) (Submitted)

Maignant, Elodie and Conrad, T. O. F. and v. Tycowicz, Christoph (2025) Tree inference with varifold distances. Geometric Science of Information 2025 . (Submitted)

Mielke, Alexander and Roubíček, Tomáš (2025) A general thermodynamical model for finitely-strained continuum with inelasticity and diffusion, its GENERIC derivation in Eulerian formulation, and some application. Zeitschrift für angewandte Mathematik und Physik .

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Nowatzky, Yannek and Russo, Francesco and Lisec, Jan and Kister, Alexander and Reinert, Knut and Muth, Thilo and Benner, Philipp (2025) FIORA: Local neighborhood-based prediction of compound mass spectra from single fragmentation events. Nature Communications, 16 (1).

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Pacey, George and Pfahl, Stephan and Schielicke, Lisa (2025) Environments and lifting mechanisms of cold-frontal convective cells during the warm season in Germany. Weather and Climate Dynamics, 6 (2).

Pavliotis, Grigorios A. and Reich, Sebastian and Zanoni, Andrea (2025) Filtered data based estimators for stochastic processes driven by colored noise. ScienceDirect, 181 . (In Press)

Piro, Vitor C. and Reinert, Knut (2025) ganon2: up-to-date and scalable metagenomics analysis. NAR Genomics and Bioinformatics, 7 (3).

Polzin, Robert and Klebanov, Ilja and Nüsken, Nikolas and Koltai, Péter (2025) Coherent set identification via direct low rank maximum likelihood estimation. Journal of Nonlinear Science .

Polzin, Robert and Klebanov, Ilja and Nüsken, Nikolas and Koltai, Péter (2025) Coherent set identification via direct low rank maximum likelihood estimation. Journal of Nonlinear Science, 35 (2). pp. 1-44.

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Reible, Benedikt M. and Djurdjevac, Ana and Delle Site, Luigi (2025) Chemical potential and variable number of particles control the quantum state: Quantum oscillators as a showcase. APL Quantum, 2 (1).

Reible, Benedikt M. and Hartmann, Carsten and Delle Site, Luigi (2025) Finite-size effects in molecular simulations: A physico-mathematical view. Advances in Physics: X .

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Schoeller, Henry and Chemnitz, Robin and Koltai, Péter and Engel, Maximilian and Pfahl, Stephan (2025) Assessing Lagrangian coherence in atmospheric blocking. Nonlinear Processes in Geophysics, 32 (1). pp. 51-73.

Schubotz, Moritz and Bingert, Sven and Conrad, T. O. F. (2025) Persistent Identifiers and Knowledge Graphs. CoRDI: Conference on Research Data Infrastructure . (Submitted)

Schwab, Remy Marcel and Gottlieb, Simon G and Reinert, Knut (2025) TetRex: a novel algorithm for index-accelerated search of highly conserved motifs. NAR Genomics and Bioinformatics, 7 (2).

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Thieme, Alexander Henry and Miri, Tahir and Marra, Alexandre R and Kobayashi, Takaaki and Rodriguez-Nava, Guillermo and Li, Yiheng and Barba, Thomas and Er, Justus and Gertler and Zamboglou, Constantinos and Alyahya, Lujain and Uhlig, Maximilian and Machiraju, Gautam and Weimann, K. and Lippert, Christoph and Conrad, T. O. F. and Ma, Jackie and Novoa, Roberto and Moor, Michael and Hernandez-Boussard, Tina and Alawad, Mohammed and Salinas, Jorge L. and Mittermaier, Mirja and Gevaert, Olivier (2025) Physician-level classification performance across multiple imaging domains with a diagnostic medical foundation model and a large dataset of annotated medical images. medRxiv . (Submitted)

Titi, Edriss and Boutros, Daniel W. (2025) On the conservation of helicity by weak solutions of the 3D Euler and inviscid MHD equations. Physica D: Nonlinear Phenomena .

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Unanue, Alvaro de Diego and Froyland, Gary and Junge, Oliver and Koltai, Péter (2025) A dynamic p-Laplacian. SIAM Journal on Mathematical Analysis, 57 (2).

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Wehlitz, Nathalie and Sadeghi, Mohsen and Montefusco, Alberto and Schütte, Christof and Pavliotis, Grigorios A. and Winkelmann, Stefanie (2025) Approximating Particle-Based Clustering Dynamics by Stochastic PDEs. SIAM Journal on Applied Dynamical Systems, 24 (2).

Weimann, K. and Conrad, T. O. F. (2025) Self-supervised pre-training with joint-embedding predictive architecture boosts ECG classification performance. Computers in Biology and Medicine, 196 . ISSN 0010-4825

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Zupan, Hana and Keller, Bettina G. (2025) Toward Grid-Based Models for Molecular Association. Journal of Chemical Theory and Computation .