Hartmann, C. and Schütte, Ch. (2012) Efficient rare event simulation by optimal nonequilibrium forcing. J. Stat. Mech. Theor. Exp., 2012 . P11004.
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Official URL: http://dx.doi.org/10.1088/1742-5468/2012/11/P11004
Abstract
Rare event simulation and estimation for systems in equilibrium are among the most challenging topics in molecular dynamics. As was shown by Jarzynski and others, nonequilibrium forcing can theoretically be used to obtain equilibrium rare event statistics. The advantage seems to be that the external force can speed up the sampling of the rare events by biasing the equilibrium distribution towards a distribution under which the rare events is no longer rare. Yet algorithmic methods based on Jarzynski's and related results often fail to be efficient because they are based on sampling in path space. We present a new method that replaces the path sampling problem by minimization of a cross-entropy-like functional which boils down to finding the optimal nonequilibrium forcing. We show how to solve the related optimization problem in an efficient way by using an iterative strategy based on milestoning.
Item Type: | Article |
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Subjects: | Mathematical and Computer Sciences > Mathematics > Numerical Analysis |
Divisions: | Department of Mathematics and Computer Science > Institute of Mathematics Other Institutes > Matheon > A - Life Sciences Department of Mathematics and Computer Science > Institute of Mathematics > Cellular Mechanics Group Department of Mathematics and Computer Science > Institute of Mathematics > BioComputing Group |
ID Code: | 1153 |
Deposited By: | INVALID USER |
Deposited On: | 20 Aug 2012 07:34 |
Last Modified: | 03 Mar 2017 14:41 |
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