Repository: Freie Universit├Ąt Berlin, Math Department

In Silico Evolution of Early Metabolism

Ullrich, Alexander and Rohrschneider, Markus and Scheuermann, Gerik and Stadler, Peter F. and Flamm, Christoph (2011) In Silico Evolution of Early Metabolism. Artificial Life, 17 (2). pp. 87-108. ISSN 1064-5462

[img] PDF - Published Version
Restricted to Repository staff only

1MB

Official URL: http://www.mitpressjournals.org/doi/abs/10.1162/ar...

Abstract

We developed a simulation tool for investigating the evolution of early metabolism, allowing us to speculate on the formation of metabolic pathways from catalyzed chemical reactions and on the development of their characteristic properties. Our model consists of a protocellular entity with a simple RNA-based genetic system and an evolving metabolism of catalytically active ribozymes that manipulate a rich underlying chemistry. Ensuring an almost open-ended and fairly realistic simulation is crucial for understanding the first steps in metabolic evolution. We show here how our simulation tool can be helpful in arguing for or against hypotheses on the evolution of metabolic pathways. We demonstrate that seemingly mutually exclusive hypotheses may well be compatible when we take into account that different processes dominate different phases in the evolution of a metabolic system. Our results suggest that forward evolution shapes metabolic network in the very early steps of evolution. In later and more complex stages, enzyme recruitment supersedes forward evolution, keeping a core set of pathways from the early phase.

Item Type:Article
Subjects:Mathematical and Computer Sciences
ID Code:1114
Deposited By: BioComp Admin
Deposited On:26 Jan 2012 10:00
Last Modified:03 Mar 2017 14:41

Repository Staff Only: item control page