Number of items: **21**.

## 2011

Held, M. and Metzner, Ph. and Prinz, J.-H. and Noé, F.
(2011)
*Mechanisms of Protein-Ligand association and its modulation by protein mutations.*
Biophys. J., 100
(3).
pp. 701-710.

## 2010

Bernhard, S. and Noé, F.
(2010)
*Optimal Identification of Semi-Rigid Domains in Macromolecules from Molecular Dynamics Simulation.*
PLoS One, 5
.
e10491.

Chodera, J. D. and Noé, F.
(2010)
*Probability distributions of molecular observables computed from Markov models. II: Uncertainties in observables and their time-evolution.*
J. Chem. Phys, 133
(10).
p. 105102.

Sarich, M. and Noé, F. and Schütte, Ch.
(2010)
*On the Approximation Quality of Markov State Models.*
Multiscale Model. Simul., 8
(4).
pp. 1154-1177.

Wu, H. and Noé, F.
(2010)
*Maximum a posteriori estimation for Markov chains based on Gaussian Markov random fields.*
Procedia Computer Science, 1
(1).
pp. 1665-1673.

## 2009

Noé, F. and Schütte, Ch. and Vanden-Eijnden, E. and Reich, L. and Weikl, T.
(2009)
*Constructing the Full Ensemble of Folding Pathways from Short Off-Equilibrium Simulations.*
Proc. Natl. Acad. Sci. USA, 106
(45).
pp. 19011-19016.

Splettstößer, T. and Noé, F. and Oda, T. and Smith, J. C.
(2009)
*Nucleotide-dependence of G-actin conformation from multiple molecular dynamics simulations and observation of a putatively polymerisation-competent superclosed state.*
Proteins, 76
.
pp. 353-364.

Schütte, Ch. and Noé, F. and Meerbach, E. and Metzner, Ph. and Hartmann, C.
(2009)
*Conformation Dynamics.*
Proceedings of the 6th International Congress on Industrial and Applied Mathematics, I. Jeltsch and G. Wanner (eds.),
.
pp. 297-335.

Azhand, Arash
(2009)
*Diffusion Processes with Hidden States from Single Molecule Experiments.*
Masters thesis, FU Berlin and TU Berlin.

Lüdge, Torsten
(2009)
*A theoretical model of conformational transitions in biomolecules based on single-molecule Förster resonance electron transfer measurements.*
Masters thesis, FU Berlin and TU Berlin.

Metzner, Ph. and Noé, F. and Schütte, Ch.
(2009)
*Estimating the Sampling Error: Distribution of Transition Matrices and Functions of Transition Matrices for Given Trajectory Data.*
Phys. Rev. E, 80
(2).
021106.

## 2008

Fischbach, M.
(2008)
*Methods for modeling metastable conformational dynamics from trajectory data.*
Masters thesis, FU Berlin.

Noé, F.
(2008)
*Probability Distributions of Molecular Observables computed from Markov Models.*
J. Chem. Phys., 128
.
p. 244103.

Noé, F. and Daidone, I. and Smith, J. C. and Di Nola, A. and Amadei, A.
(2008)
*Solvent Electrostriction Driven Peptide Folding revealed by Quasi-Gaussian Entropy Theory and Molecular Dynamics Simulation.*
J. Phys. Chem. B, 112
.
pp. 11155-11163.

Noé, F. and Fischer, S.
(2008)
*Transition Networks for Modeling the Kinetics of Conformational Change in Macromolecules.*
Curr. Opin. Struct. Biol., 18
.
pp. 154-162.

Sakalli, I.
(2008)
*Parallelization Strategies for a Brownian Dynamics Algorithm.*
Other thesis, FU Berlin.

## 2007

Noé, F. and Horenko, I. and Schütte, Ch. and Smith, J. C.
(2007)
*Hierarchical Analysis of Conformational Dynamics in Biomolecules: Transition Networks of Metastable States.*
J. Chem. Phys., 126
(15).
p. 155102.

Held, M.
(2007)
*Conformational Studies of UDP-N-Acetyl-Glucosamine in Environments of Increasing Complexity.*
Masters thesis, FU Berlin.

Horenko, I. and Hartmann, C. and Schütte, Ch. and Noé, F.
(2007)
*Data-based Parameter Estimation of Generalized Multidimensional Langevin Processes.*
Phys. Rev. E, 76
(01).
016706.

Noé, F. and Oswald, M. and Reinelt, G.
(2007)
*Optimization in Graphs with Limited Information on the Edge Weights.*
Operations Research Proceedings 2007. Editors: J. Kalcsics and S. Nickel
.
pp. 435-440.

Noé, F. and Smith, J. C. and Schütte, Ch.
(2007)
*A network-based approach to biomolecular dynamics.*
From Computational Biophysics to Systems Biology (CBSB07). Editors: U. H. E. Hansmann, J. Meinke, S. Mohanty and O. Zimmermann, NIC Se
.

This list was generated on **Tue Sep 26 16:26:28 2017 CEST**.