Number of items: **27**.

## 2019

Paul, F. and Wu, H. and Vossel, M. and de Groot, B.L. and Noé, F.
(2019)
*Identification of kinetic order parameters for non-equilibrium dynamics.*
J. Chem. Phys., 150
(16).
p. 164120.
ISSN 0021-9606, ESSN: 1089-7690

## 2018

Noé, F. and Wu, H.
(2018)
*Boltzmann Generators - Sampling Equilibrium States of Many-Body Systems with Deep Learning.*
SFB 1114 Preprint in arXiv:1812.01729
.
pp. 1-17.
(Unpublished)

Scherer, M. K. and Husic, B.E. and Hoffmann, M. and Paul, F. and Wu, H. and Noé, F.
(2018)
*Variational Selection of Features for Molecular Kinetics.*
SFB 1114 Preprint in arXiv:1811.11714
.
pp. 1-12.
(Unpublished)

Koltai, P. and Wu, H. and Noé, F. and Schütte, Ch.
(2018)
*Optimal data-driven estimation of generalized Markov state models for non-equilibrium dynamics.*
Computation, 6(1)
(22).
ISSN 2079-3197 (online)

Klus, S. and Nüske, F. and Koltai, P. and Wu, H. and Kevrekidis, I. and Schütte, Ch. and Noé, F.
(2018)
*Data-driven model reduction and transfer operator approximation.*
Journal of Nonlinear Science, 28
(1).
pp. 1-26.

Mardt, A. and Pasquali, L. and Wu, H. and Noé, F.
(2018)
*VAMPnets: Deep learning of molecular kinetics.*
Nat. Comm., 9
.
p. 5.

## 2017

Paul, F. and Wehmeyer, C. and Abualrous, E. T. and Wu, H. and Crabtree, M. D. and Schöneberg, J. and Clarke, J. and Freund, C. and Weikl, T. and Noé, F.
(2017)
*Protein-peptide association kinetics beyond the seconds timescale from atomistic simulations.*
Nat. Comm., 8
(1095).

Olsson, Simon and Wu, H. and Paul, F. and Clementi, C. and Noé, F.
(2017)
*Combining experimental and simulation data of molecular processes via augmented Markov models.*
Proc. Natl. Acad. Sci. USA, 114
.
pp. 8265-8270.

Nüske, F. and Wu, H. and Wehmeyer, C. and Clementi, C. and Noé, F.
(2017)
*Markov State Models from short non-Equilibrium Simulations - Analysis and Correction of Estimation Bias.*
J. Chem. Phys., 146
.
094104.

Wu, H. and Nüske, F. and Paul, F. and Klus, S. and Koltai, Péter and Noé, F.
(2017)
*Variational Koopman models: slow collective variables and molecular kinetics from short off-equilibrium simulations.*
J. Chem. Phys., 146
.
p. 154104.

Wu, H. and Noé, F.
(2017)
*Variational approach for learning Markov processes from time series data.*
https://arxiv.org/abs/1707.04659
.

## 2016

Wu, H. and Paul, F. and Wehmeyer, C. and Noé, F.
(2016)
*Multiensemble Markov models of molecular thermodynamics and kinetics.*
Proceedings of the National Academy of Sciences, 113
(23).
E3221-E3230 .
ISSN 0027-8424

Trendelkamp-Schroer, B. and Wu, H. and Noé, F.
(2016)
*Reversible Markov chain estimation using convex-concave programming.*
arXiv
.
1603.01640.

Wu, H. and Noé, F.
(2016)
*Spectral learning of dynamic systems from nonequilibrium data.*
NIPS, 29
.
pp. 4179-4187.

## 2015

Trendelkamp-Schroer, B. and Wu, H. and Paul, F. and Noé, F.
(2015)
*Estimation and uncertainty of reversible Markov models.*
J. Chem. Phys., 143
(17).
p. 174101.

Wu, H. and Noé, F.
(2015)
*Gaussian Markov transition models of molecular kinetics.*
J. Chem. Phys., 142
(8).
084104.

Wu, H.
(2015)
*Maximum Margin Clustering for State Decomposition of Metastable Systems.*
Neurocomputing, 164
.
pp. 5-22.
ISSN 0925-2312

Wu, H. and Prinz, J.-H. and Noé, F.
(2015)
*Projected Metastable Markov Processes and Their Estimation with Observable Operator Models.*
J. Chem. Phys., 143
(14).
p. 144101.

## 2014

Wu, H. and Mey, A.S.J.S. and Rosta, E. and Noé, F.
(2014)
*Statistically optimal analysis of state-discretized trajectory data from multiple thermodynamic states.*
J. Chem. Phys., 141
(21).
p. 214106.

Mey, A.S.J.S. and Wu, H. and Noé, F.
(2014)
*xTRAM: Estimating equilibrium expectations from time-correlated simulation data at multiple thermodynamic states.*
Phys. Rev. X, 4
(4).
041018.

Wu, H. and Noé, F.
(2014)
*Optimal estimation of free energies and stationary densities from multiple biased simulations.*
SIAM Multiscale Model. Simul., 12
.
pp. 25-54.

## 2013

Noé, F. and Wu, H. and Prinz, J.-H. and Plattner, N.
(2013)
*Projected and Hidden Markov Models for calculating kinetics and metastable states of complex molecules.*
J. Chem. Phys., 139
.
p. 184114.

## 2011

Prinz, J.-H. and Wu, H. and Sarich, M. and Keller, B. and Senne, M. and Held, M. and Chodera, J. D. and Schütte, Ch. and Noé, F.
(2011)
*Markov models of molecular kinetics: Generation and Validation.*
J. Chem. Phys., 134
.
p. 174105.

Wu, H. and Noé, F.
(2011)
*Bayesian framework for modeling diffusion processes with nonlinear drift based on nonlinear and incomplete observations.*
Phys. Rev. E, 83
(3).
036705.

Wu, H. and Noé, F.
(2011)
*A flat Dirichlet process switching model for Bayesian estimation of hybrid systems.*
Procedia Computer Science, 4
.
pp. 1393-1402.

## 2010

Wu, H. and Noé, F.
(2010)
*Maximum a posteriori estimation for Markov chains based on Gaussian Markov random fields.*
Procedia Computer Science, 1
(1).
pp. 1665-1673.

Wu, H. and Noé, F.
(2010)
*Probability Distance Based Compression of Hidden Markov Models.*
Multiscale Model. Simul., 8
.
pp. 1838-1861.

This list was generated on **Sat Jul 20 21:05:18 2019 CEST**.